RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ARHGAP19Q14CB8 494 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 LSM12Q3MHD2 195 aaKnown RBP8.18□□□□□ -1.1
USP54-215ENST00000497106 CHST15Q7LFX5 561 aaPredicted RBP8.18□□□□□ -1.1
USP54-215ENST00000497106 ALYREFQ86V81 257 aaKnown RBP8.18□□□□□ -1.1
USP54-215ENST00000497106 SNX32Q86XE0 403 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 SCUBE1Q8IWY4 988 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 FLCNQ8NFG4 579 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 TSPEARQ8WU66 669 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 C12orf66Q96MD2 445 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 APOOQ9BUR5 198 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 LRTM1Q9HBL6 345 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 KLC4Q9NSK0 619 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 IMP3Q9NV31 184 aaKnown RBP8.18□□□□□ -1.1
USP54-215ENST00000497106 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.18□□□□□ -1.1
USP54-215ENST00000497106 CROTQ9UKG9 612 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 ZNF490Q9ULM2 529 aaPredicted RBP8.18□□□□□ -1.1
USP54-215ENST00000497106 CA14Q9ULX7 337 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 HS3ST3A1Q9Y663 406 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 SHROOM3Q8TF72 1996 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 IGLV3-16A0A075B6K0 115 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 EVPLLA8MZ36 301 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 NR5A2O00482 541 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 MRASO14807 208 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 OR4F21O95013 312 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 VIPP01282 170 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 CAPN1P07384 714 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 F7P08709 466 aaPredicted RBP8.18□□□□□ -1.1
USP54-215ENST00000497106 GNSP15586 552 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 ALOX15P16050 662 aaPredicted RBP8.18□□□□□ -1.1
USP54-215ENST00000497106 HOXB6P17509 224 aaKnown RBP8.18□□□□□ -1.1
USP54-215ENST00000497106 MAT2AP31153 395 aaKnown RBP8.18□□□□□ -1.1
USP54-215ENST00000497106 ARL4DP49703 201 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 CCR5P51681 352 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 ERVK-8P63133 956 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 DDX39BQ13838 428 aaKnown RBP8.18□□□□□ -1.1
USP54-215ENST00000497106 AGTRAPQ6RW13 159 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 C6orf89Q6UWU4 347 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 PDZD3Q86UT5 571 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 TBC1D21Q8IYX1 336 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 GJD3Q8N144 294 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 ERLEC1Q96DZ1 483 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 RMDN2Q96LZ7 410 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 PITHD1Q9GZP4 211 aaPredicted RBP8.18□□□□□ -1.1
USP54-215ENST00000497106 NMUR2Q9GZQ4 415 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 COL4A4P53420 1690 aaPredicted RBP8.18□□□□□ -1.1
USP54-215ENST00000497106 TOP3BO95985 862 aaKnown RBP8.18□□□□□ -1.1
USP54-215ENST00000497106 ACP5P13686 325 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 IRF4Q15306 451 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 DPY19L1Q2PZI1 675 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 PRAMEF14Q5SWL7 426 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 PRAMEF13Q5VWM6 474 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 KANK2Q63ZY3 851 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 KIAA0895LQ68EN5 471 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 PRR23BQ6ZRT6 265 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 THOC6Q86W42 341 aaKnown RBP8.18□□□□□ -1.1
USP54-215ENST00000497106 TRIM69Q86WT6 500 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 SLC22A15Q8IZD6 547 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 AADATQ8N5Z0 425 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 CATSPER1Q8NEC5 780 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 MYLIPQ8WY64 445 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 PTERQ96BW5 349 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 KLHDC7BQ96G42 594 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 THTPAQ9BU02 230 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 OSBPL6Q9BZF3 934 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 WDR41Q9HAD4 459 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 PCTPQ9UKL6 214 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 BAG5Q9UL15 447 aa8.18□□□□□ -1.1
USP54-215ENST00000497106 LOC100653049A0A140TA62 436 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 PIP5K1BO14986 540 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 ZNF821O75541 412 aaPredicted RBP8.17□□□□□ -1.1
USP54-215ENST00000497106 KRT34O76011 436 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 ITPKAP23677 461 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 ABATP80404 500 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 RGS1Q08116 209 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 NFYCQ13952 458 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 PIP5KL1Q5T9C9 394 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 GPR153Q6NV75 609 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 PACS2Q86VP3 889 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 GKN2Q86XP6 184 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 RBM12BQ8IXT5 1001 aaKnown RBP8.17□□□□□ -1.1
USP54-215ENST00000497106 FITM2Q8N6M3 262 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 NATD1Q8N6N6 113 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 TRIML2Q8N7C3 387 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 LINC00615Q96LM1 132 aaPredicted RBP8.17□□□□□ -1.1
USP54-215ENST00000497106 IRAK4Q9NWZ3 460 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 ZIM2Q9NZV7 527 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 WNT16Q9UBV4 365 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 SUSD2Q9UGT4 822 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 ZDHHC2Q9UIJ5 367 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 PAK4O96013 591 aaPredicted RBP8.17□□□□□ -1.1
USP54-215ENST00000497106 AOC1P19801 751 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 CD6P30203 668 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 SHMT2P34897 504 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 INHBCP55103 352 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 SMAD2Q15796 467 aaKnown RBP8.17□□□□□ -1.1
USP54-215ENST00000497106 SAMD4BQ5PRF9 694 aaKnown RBP8.17□□□□□ -1.1
USP54-215ENST00000497106 ANO7Q6IWH7 933 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 CHSY3Q70JA7 882 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 SYT12Q8IV01 421 aa8.17□□□□□ -1.1
USP54-215ENST00000497106 FBXO15Q8NCQ5 510 aaPredicted RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms