RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 C7orf26Q96N11 449 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 PDCD10Q9BUL8 212 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 PCDHB11Q9Y5F2 797 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 PGRMC2O15173 223 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 UGT1A9O60656 530 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 UGT1A6P19224 532 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 UGT1A1P22309 533 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 UGT1A4P22310 534 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 VIPR1P32241 457 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 UGT1A3P35503 534 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 KHKP50053 298 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 GDF10P55107 478 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 LRRTM4Q86VH4 590 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 LRRC17Q8N6Y2 441 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 PIGXQ8TBF5 258 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 ZNF384Q8TF68 577 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 UGT1A7Q9HAW7 530 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 UGT1A10Q9HAW8 530 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 UGT1A8Q9HAW9 530 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 PCDHGA3Q9Y5H0 932 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 PARP4Q9UKK3 1724 aaKnown RBP12.91□□□□□ -0.34
PTPRF-215ENST00000496447 FADS2P1A8MWK0 482 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 MAGEB17A8MXT2 336 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 CLDN25C9JDP6 229 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 PUDPQ08623 228 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 GRM2Q14416 872 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 TSC22D1Q15714 1073 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 PUS10Q3MIT2 529 aaKnown RBP12.91□□□□□ -0.34
PTPRF-215ENST00000496447 PIK3R6Q5UE93 754 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 C8orf48Q96LL4 319 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 PNO1Q9NRX1 252 aaKnown RBP12.91□□□□□ -0.34
PTPRF-215ENST00000496447 RASSF1Q9NS23 344 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-215ENST00000496447 NFAT5O94916 1531 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 CAPN8A6NHC0 703 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 PIP5K1BO14986 540 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 SOD2P04179 222 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 KCNE1P15382 129 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 NFATC2Q13469 925 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 CMTM8Q8IZV2 173 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 GPR151Q8TDV0 419 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 TSEN15Q8WW01 171 aaKnown RBP12.91□□□□□ -0.34
PTPRF-215ENST00000496447 ZBED6CLQ96FA7 236 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-215ENST00000496447 PIGVQ9NUD9 493 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 GABRQQ9UN88 632 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 FADS3Q9Y5Q0 445 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 NEMP2A6NFY4 417 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 C2orf71A6NGG8 1288 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 DCLK1O15075 740 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 TLX3O43711 291 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-215ENST00000496447 HCN1O60741 890 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 ARRB1P49407 418 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-215ENST00000496447 CLCN7P51798 805 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 OC90Q02509 493 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-215ENST00000496447 REP15Q6BDI9 236 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 KCT2Q8NC54 265 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 GSDMCQ9BYG8 508 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 BCO2Q9BYV7 579 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 MUC13Q9H3R2 512 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 CREBZFQ9NS37 354 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 MYO5BQ9ULV0 1848 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 TYRP14679 529 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 SCNN1AP37088 669 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 PDX1P52945 283 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 NRG3P56975 720 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 LIPEQ05469 1076 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 SLC10A7Q0GE19 358 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 GPR17Q13304 367 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 KHDC1Q4VXA5 237 aaKnown RBP12.9□□□□□ -0.34
PTPRF-215ENST00000496447 VWA5B1Q5TIE3 1220 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 SLC30A6Q6NXT4 461 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 PARP8Q8N3A8 854 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 FSTL5Q8N475 847 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-215ENST00000496447 FAM47BQ8NA70 645 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 OR52J3Q8NH60 311 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 ZNF296Q8WUU4 475 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-215ENST00000496447 RNF31Q96EP0 1072 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 MCCC2Q9HCC0 563 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 PHF11Q9UIL8 331 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 CNTN6Q9UQ52 1028 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 HAPLN1P10915 354 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-215ENST00000496447 PCSK2P16519 638 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 TAS2R39P59534 338 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 MYLK3Q32MK0 819 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 C5orf22Q49AR2 442 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 ZCCHC12Q6PEW1 402 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 ZNF461Q8TAF7 563 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 MTERF1Q99551 399 aaKnown RBP12.9□□□□□ -0.34
PTPRF-215ENST00000496447 CCM2Q9BSQ5 444 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 NUSAP1Q9BXS6 441 aaKnown RBP12.9□□□□□ -0.34
PTPRF-215ENST00000496447 RNF186Q9NXI6 227 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 GNEQ9Y223 722 aaKnown RBP12.9□□□□□ -0.34
PTPRF-215ENST00000496447 IRAK3Q9Y616 596 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 HS3ST4Q9Y661 456 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 C9JVG2 144 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 METTL18O95568 372 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 IGFBP5P24593 272 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 PRKCHP24723 683 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 NUP54Q7Z3B4 507 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 HPS6Q86YV9 775 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms