RNA–Protein interactions for RNA: ENST00000496375.1

CXCL12-208, Transcript of C-X-C motif chemokine ligand 12, human

TSL 5

Gene CXCL12, Length 803 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CXCL12-208	ENST00000496375	NDUFS1	P28331	727 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	PRLHR	P49683	370 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	RPS15	P62841	145 aa	Known RBP	13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	PRKAA1	Q13131	559 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	GPS2	Q13227	327 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	UBAP2L	Q14157	1087 aa	Known RBP	13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	UGT8	Q16880	541 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	WHAMMP3	Q1A5X7	153 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	PCGF5	Q86SE9	256 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	APLF	Q8IW19	511 aa	Predicted RBP	13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	KLHL7	Q8IXQ5	586 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	OR8K5	Q8NH50	307 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	SEC14L1	Q92503	715 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	MR1	Q95460	341 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	SERPINB12	Q96P63	405 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	TREX1	Q9NSU2	369 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	BFAR	Q9NZS9	450 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	ASIC3	Q9UHC3	531 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	PLAA	Q9Y263	795 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	FARSA	Q9Y285	508 aa	Known RBP	13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	BTRC	Q9Y297	605 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	SPTB	P11277	2137 aa		13.97	□□□□□ -0.17
CXCL12-208	ENST00000496375	GSAP	A4D1B5	854 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	FAM187A	A6NFU0	413 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	SLC9B1P1	A6NJY1	282 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	TP73	O15350	636 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	TTI1	O43156	1089 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	CDH3	P22223	829 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	MC4R	P32245	332 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	FOXN2	P32314	431 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	CKAP4	Q07065	602 aa	Known RBP	13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	IL10RA	Q13651	578 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	MORF4L2	Q15014	288 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	KCTD19	Q17RG1	926 aa	Predicted RBP	13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	CCDC38	Q502W7	563 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	CPZ	Q66K79	652 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	MICALCL	Q6ZW33	695 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	SYVN1	Q86TM6	617 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	SLC38A9	Q8NBW4	561 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	ACVR1C	Q8NER5	493 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	PPHLN1	Q8NEY8	458 aa	Known RBP	13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	HEXDC	Q8WVB3	486 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	LCN9	Q8WX39	176 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	THAP4	Q8WY91	577 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	MIB2	Q96AX9	1013 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	ZNF778	Q96MU6	729 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	FERD3L	Q96RJ6	166 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	KRT12	Q99456	494 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	TRIM55	Q9BYV6	548 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	COG4	Q9H9E3	785 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	FANCE	Q9HB96	536 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	LATS2	Q9NRM7	1088 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	C1GALT1	Q9NS00	363 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	ZDHHC3	Q9NYG2	299 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	ANKMY1	Q9P2S6	941 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	POMT2	Q9UKY4	750 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	SOX13	Q9UN79	622 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	MRFAP1	Q9Y605	127 aa		13.96	□□□□□ -0.17
CXCL12-208	ENST00000496375	TNRC6A	Q8NDV7	1962 aa	Known RBP	13.96	□□□□□ -0.18
CXCL12-208	ENST00000496375	LRRK2	Q5S007	2527 aa		13.96	□□□□□ -0.18
CXCL12-208	ENST00000496375	NBPF19	A0A087WUL8	3843 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	C17orf113	A0A1B0GUU1	675 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	NDC80	O14777	642 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	PDGFA	P04085	211 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	KLK3	P07288	261 aa	Predicted RBP	13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	CDKN1C	P49918	316 aa	Predicted RBP	13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	TERF1	P54274	439 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	MLLT10	P55197	1068 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	SESN2	P58004	480 aa	Predicted RBP	13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	CACNG1	Q06432	222 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	SRSF1	Q07955	248 aa	Known RBP eCLIP	13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	ABR	Q12979	859 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	CHAF1B	Q13112	559 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	ZRANB3	Q5FWF4	1079 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	PRAMEF17	Q5VTA0	474 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	IZUMO3	Q5VZ72	239 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	HIBCH	Q6NVY1	386 aa	Predicted RBP	13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	AFTPH	Q6ULP2	937 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	ZNF517	Q6ZMY9	492 aa	Predicted RBP	13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	MAATS1	Q7Z4T9	603 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	LRFN5	Q96NI6	719 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	CHST8	Q9H2A9	424 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	SRMS	Q9H3Y6	488 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	CHRAC1	Q9NRG0	131 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	SYBU	Q9NX95	663 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	SLC2A6	Q9UGQ3	507 aa		13.95	□□□□□ -0.18
CXCL12-208	ENST00000496375	PIKFYVE	Q9Y2I7	2098 aa		13.94	□□□□□ -0.18
CXCL12-208	ENST00000496375	MAGEB16	A2A368	324 aa		13.94	□□□□□ -0.18
CXCL12-208	ENST00000496375	ARGFX	A6NJG6	315 aa		13.94	□□□□□ -0.18
CXCL12-208	ENST00000496375	MEN1	O00255	615 aa		13.94	□□□□□ -0.18
CXCL12-208	ENST00000496375	MATN2	O00339	956 aa		13.94	□□□□□ -0.18
CXCL12-208	ENST00000496375	IFRD1	O00458	451 aa	Predicted RBP	13.94	□□□□□ -0.18
CXCL12-208	ENST00000496375	BTN3A3	O00478	584 aa		13.94	□□□□□ -0.18
CXCL12-208	ENST00000496375	BTN3A1	O00481	513 aa		13.94	□□□□□ -0.18
CXCL12-208	ENST00000496375	URI1	O94763	535 aa	Predicted RBP	13.94	□□□□□ -0.18
CXCL12-208	ENST00000496375	SEC31A	O94979	1220 aa	Known RBP	13.94	□□□□□ -0.18
CXCL12-208	ENST00000496375	PRSS56	P0CW18	603 aa		13.94	□□□□□ -0.18
CXCL12-208	ENST00000496375	ACRV1	P26436	265 aa		13.94	□□□□□ -0.18
CXCL12-208	ENST00000496375	MGAT1	P26572	445 aa		13.94	□□□□□ -0.18
CXCL12-208	ENST00000496375	PDHA2	P29803	388 aa		13.94	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms