RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-222ENST00000495981 CALUO43852 315 aaPredicted RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 NOBOXO60393 691 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 DIAPH2O60879 1101 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 LDOC1O95751 146 aaPredicted RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 CLDN1O95832 211 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 CALCAP01258 141 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 KRT1P04264 644 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 TUBB4AP04350 444 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 ACP5P13686 325 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 HNF1BP35680 557 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 PGM1P36871 562 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 CSKP41240 450 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 RPL34P49207 117 aaKnown RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 STK19P49842 368 aaPredicted RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 ANXA11P50995 505 aaKnown RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 IRAK1P51617 712 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 GALCP54803 685 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 NXPH1P58417 271 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 RAC3P60763 192 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 RPS24P62847 133 aaKnown RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 PITX1P78337 314 aaPredicted RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 TAP2Q03519 686 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 PTP4A2Q12974 167 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 BECN1Q14457 450 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 TGIF1Q15583 401 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 CST6Q15828 149 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 HNRNPA1L2Q32P51 320 aaKnown RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 TTC31Q49AM3 519 aaPredicted RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 MPPE1Q53F39 396 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 FSCBQ5H9T9 825 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 C9orf64Q5T6V5 341 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 OTUD1Q5VV17 481 aaPredicted RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 BSPRYQ5W0U4 402 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 KRT39Q6A163 491 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 CLEC9AQ6UXN8 241 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 SLC15A3Q8IY34 581 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 EID2Q8N6I1 236 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 C11orf44Q8N8P7 122 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 HJURPQ8NCD3 748 aaPredicted RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 FBXL13Q8NEE6 735 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 OR56A1Q8NGH5 318 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 OR52K2Q8NGK3 314 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 DQX1Q8TE96 717 aaKnown RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 SAP25Q8TEE9 199 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 DDI1Q8WTU0 396 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 HTR3CQ8WXA8 447 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 SNX21Q969T3 373 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 SLC35C1Q96A29 364 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 ELP4Q96EB1 424 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 AP1M1Q9BXS5 423 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 UBXN6Q9BZV1 441 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 SLC25A18Q9H1K4 315 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 STN1Q9H668 368 aaKnown RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 CCDC134Q9H6E4 229 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 SGK2Q9HBY8 427 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 SEMA4BQ9NPR2 832 aaPredicted RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 CNGB3Q9NQW8 809 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 LIN7CQ9NUP9 197 aaKnown RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 HAUS2Q9NVX0 235 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 RAB20Q9NX57 234 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 SLC25A10Q9UBX3 287 aaPredicted RBP4.28□□□□□ -1.72
VPS52-222ENST00000495981 CLCA2Q9UQC9 943 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 NEU2Q9Y3R4 380 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 DOCK9Q9BZ29 2069 aa4.28□□□□□ -1.72
VPS52-222ENST00000495981 SCN8AQ9UQD0 1980 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 SDK2Q58EX2 2172 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 LY6G6EA0A0G2JKS1 128 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 GOLGA6L7A0A1B0GV03 622 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 TRIM49BA6NDI0 452 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 TTC34A8MYJ7 566 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 M0QYV0 167 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 ETV2O00321 342 aaPredicted RBP4.27□□□□□ -1.73
VPS52-222ENST00000495981 BIN1O00499 593 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 ZNF185O15231 689 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 SLC16A3O15427 465 aaKnown RBP4.27□□□□□ -1.73
VPS52-222ENST00000495981 TBL1XO60907 577 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 USP12O75317 370 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 LUC7L3O95232 432 aaKnown RBP4.27□□□□□ -1.73
VPS52-222ENST00000495981 ELANEP08246 267 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 GIMD1P0DJR0 217 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 ACADMP11310 421 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 PEPDP12955 493 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 CMA1P23946 247 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 MGAT1P26572 445 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 PSMD8P48556 350 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 HARS2P49590 506 aaKnown RBP4.27□□□□□ -1.73
VPS52-222ENST00000495981 PDX1P52945 283 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 TIRAPP58753 221 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 ARF3P61204 181 aaPredicted RBP4.27□□□□□ -1.73
VPS52-222ENST00000495981 RPP30P78346 268 aaKnown RBP4.27□□□□□ -1.73
VPS52-222ENST00000495981 HSD11B2P80365 405 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 ARF1P84077 181 aaKnown RBP4.27□□□□□ -1.73
VPS52-222ENST00000495981 OCA2Q04671 838 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 EIF4EBP2Q13542 120 aaPredicted RBP4.27□□□□□ -1.73
VPS52-222ENST00000495981 CDH18Q13634 790 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 ELAVL3Q14576 367 aaKnown RBP4.27□□□□□ -1.73
VPS52-222ENST00000495981 E2F5Q15329 346 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 SEC23BQ15437 767 aa4.27□□□□□ -1.73
VPS52-222ENST00000495981 MLANAQ16655 118 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms