RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 CDC7O00311 574 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 DSCR3O14972 297 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 CAPN5O15484 640 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 DPM1O60762 260 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 MITFO75030 526 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 ERN1O75460 977 aaKnown RBP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 SERPINA1P01009 418 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 RPLP0P05388 317 aaKnown RBP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 LCKP06239 509 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 ALOX12P18054 663 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 PSMA3P25788 255 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 DNAJA1P31689 397 aaKnown RBP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 LIPAP38571 399 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 PRIM2P49643 509 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 CLCNKBP51801 687 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 RABGGTBP53611 331 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 OR2B6P58173 313 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 GNG2P59768 71 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 DSC2Q02487 901 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 TEKQ02763 1124 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 FPGSQ05932 587 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 IHHQ14623 411 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 PCBP2Q15366 365 aaKnown RBP eCLIP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 AP5B1Q2VPB7 878 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 FAM209AQ5JX71 171 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 OR2T5Q6IEZ7 315 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 KIAA1841Q6NSI8 718 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 LETMD1Q6P1Q0 360 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 CTU1Q7Z7A3 348 aaKnown RBP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 ZDHHC21Q8IVQ6 265 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 PGBD3Q8N328 593 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 OR2T29Q8NH02 315 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 ANGPTL6Q8NI99 470 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 NCLNQ969V3 563 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 SENP8Q96LD8 212 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 RNF38Q9H0F5 515 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 IKZF5Q9H5V7 419 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 IL1RAPQ9NPH3 570 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 ABCC13Q9NSE7 274 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 RNF19AQ9NV58 838 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 C1orf109Q9NX04 203 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 VNN3Q9NY84 501 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 NUDT4Q9NZJ9 180 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 PNMA8BQ9ULN7 279 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 POLR3HQ9Y535 204 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 KCTD3Q9Y597 815 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 TNPO3Q9Y5L0 923 aaKnown RBP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 CENPXA8MT69 81 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 M0R082 166 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 BTN3A1O00481 513 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 WBP4O75554 376 aaKnown RBP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 TSPAN12O95859 305 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 PRKCAP17252 672 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 GTF2E2P29084 291 aaKnown RBP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 PCSK1P29120 753 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 ITKQ08881 620 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 SLC10A7Q0GE19 358 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 C19orf57Q0VDD7 668 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 SIM2Q14190 667 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 STARD3Q14849 445 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 ZFP69Q49AA0 526 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 SPANXN2Q5MJ10 180 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 UBXN11Q5T124 520 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 LRIF1Q5T3J3 769 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 TAPT1Q6NXT6 567 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 AFTPHQ6ULP2 937 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 IL27RAQ6UWB1 636 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 VN1R5Q7Z5H4 357 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 GALNT5Q7Z7M9 940 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 CCDC190Q86UF4 302 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 GPSM1Q86YR5 675 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 SULF1Q8IWU6 871 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 SLC22A15Q8IZD6 547 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 METTL6Q8TCB7 284 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 TMCO6Q96DC7 493 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 RAD9AQ99638 391 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 CPPED1Q9BRF8 314 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 NUAK2Q9H093 628 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 R3HDMLQ9H3Y0 253 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 CLMPQ9H6B4 373 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 EVLQ9UI08 416 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 EIF2B4Q9UI10 523 aaKnown RBP9.48□□□□□ -0.89
SYNE1-230ENST00000495090 MAN2B2Q9Y2E5 1009 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 CCL27Q9Y4X3 112 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 PCDHGA3Q9Y5H0 932 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 SPO11Q9Y5K1 396 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 LYVE1Q9Y5Y7 322 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 U3KQV3 271 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 GOLGA8CPA6NN73 597 aa9.47□□□□□ -0.89
SYNE1-230ENST00000495090 FAM25AB3EWG3 89 aa9.47□□□□□ -0.89
SYNE1-230ENST00000495090 FAM25CB3EWG5 89 aa9.47□□□□□ -0.89
SYNE1-230ENST00000495090 FAM25GB3EWG6 89 aa9.47□□□□□ -0.89
SYNE1-230ENST00000495090 ENPP3O14638 875 aa9.47□□□□□ -0.89
SYNE1-230ENST00000495090 WNT9AO14904 365 aa9.47□□□□□ -0.89
SYNE1-230ENST00000495090 PER2O15055 1255 aa9.47□□□□□ -0.89
SYNE1-230ENST00000495090 VPS26AO75436 327 aa9.47□□□□□ -0.89
SYNE1-230ENST00000495090 UGT2B17O75795 530 aa9.47□□□□□ -0.89
SYNE1-230ENST00000495090 CCNDBP1O95273 360 aa9.47□□□□□ -0.89
SYNE1-230ENST00000495090 PGLSO95336 258 aa9.47□□□□□ -0.89
SYNE1-230ENST00000495090 PGRP06401 933 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms