RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 MFSD1Q9H3U5 465 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 MAGEE1Q9HCI5 957 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 SACM1LQ9NTJ5 587 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 TBC1D14Q9P2M4 693 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 PGAP2Q9UHJ9 254 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 EFCAB14O75071 495 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 PRKD3O94806 890 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 GJB5O95377 273 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 RPL10P27635 214 aaKnown RBP16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 CDC42P60953 191 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 MORN1Q5T089 497 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 TMEM74Q96NL1 305 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 BBS4Q96RK4 519 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 KIFC1Q9BW19 673 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 CREBZFQ9NS37 354 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 MOCS1Q9NZB8 636 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 RP1L1Q8IWN7 2480 aaPredicted RBP16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 A0A1B0GW55 424 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 RPN2P04844 631 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 DUX4L2P0CJ85 424 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 DUX4L3P0CJ86 424 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 DUX4L4P0CJ87 422 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 DUX4L5P0CJ88 424 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 DUX4L6P0CJ89 424 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 DUX4L7P0CJ90 424 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 VBP1P61758 197 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 CMTM8Q8IZV2 173 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 C3orf58Q8NDZ4 430 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 LRTM1Q9HBL6 345 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 DUX4Q9UBX2 424 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 ADAM30Q9UKF2 790 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 ERGIC3Q9Y282 383 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 SPEF1Q9Y4P9 236 aa16.01■□□□□ 0.15
CCDC88B-209ENST00000494080 FAM220BPB1ANY3 271 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 H0YC42 278 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 POP4O95707 220 aaKnown RBP16■□□□□ 0.15
CCDC88B-209ENST00000494080 PPP2R1BP30154 601 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 CPOXP36551 454 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 NKX2-5P52952 324 aaPredicted RBP16■□□□□ 0.15
CCDC88B-209ENST00000494080 BNC1Q01954 994 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 TUBA3CQ13748 450 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 GRPEL2Q8TAA5 225 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 CSGALNACT1Q8TDX6 532 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 STON2Q8WXE9 905 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 CLP1Q92989 425 aaKnown RBP16■□□□□ 0.15
CCDC88B-209ENST00000494080 ING3Q9NXR8 418 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 ZNF624Q9P2J8 865 aaPredicted RBP16■□□□□ 0.15
CCDC88B-209ENST00000494080 DNAJB9Q9UBS3 223 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 CDV3Q9UKY7 258 aaKnown RBP16■□□□□ 0.15
CCDC88B-209ENST00000494080 PRORSD1PA6NEY8 169 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 H3BMQ9 156 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 SDHDO14521 159 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 RXRGP48443 463 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 ELP6Q0PNE2 266 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 RFTN1Q14699 578 aaPredicted RBP16■□□□□ 0.15
CCDC88B-209ENST00000494080 PLA2G4EQ3MJ16 856 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 TPGS2Q68CL5 300 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 CES5AQ6NT32 575 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 BORAQ6PGQ7 559 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 NEK10Q6ZWH5 1172 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 TTC9BQ8N6N2 239 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 ZNF366Q8N895 744 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 OR8D1Q8WZ84 308 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 IGSF8Q969P0 613 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 COG8Q96MW5 612 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 LRRC3Q9BY71 257 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 MIR1-1HGQ9H1L0 117 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 PEX16Q9Y5Y5 336 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 SCN9AQ15858 1988 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 NHSQ6T4R5 1651 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 MAST2Q6P0Q8 1798 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 SNTNA6NMZ2 147 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 ADH1CP00326 375 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 MYL12AP19105 171 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 ANXA11P50995 505 aaKnown RBP16■□□□□ 0.15
CCDC88B-209ENST00000494080 BLVRAP53004 296 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 OLR1P78380 273 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 COX10Q12887 443 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 ZSWIM7Q19AV6 140 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 DEPDC4Q8N2C3 294 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 PRRG3Q9BZD7 231 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 RAD18Q9NS91 495 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 FBXO10Q9UK96 956 aa16■□□□□ 0.15
CCDC88B-209ENST00000494080 A0A1W2PQ72 361 aa15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 BHMG1C9JSJ3 638 aaPredicted RBP15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 H0YJX3 145 aa15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 H3BM21 787 aa15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 QSOX1O00391 747 aa15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 MTX2O75431 263 aa15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 ZNF24P17028 368 aa15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 EPORP19235 508 aa15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 ITGA1P56199 1179 aa15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 GTF2H2Q13888 395 aa15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 GTF2H2CQ6P1K8 395 aa15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 TMEM174Q8WUU8 243 aa15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 AARSD1Q9BTE6 412 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 IRF2BPLQ9H1B7 796 aa15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 SERHL2Q9H4I8 314 aa15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 SERHLQ9NQF3 203 aa15.99■□□□□ 0.15
CCDC88B-209ENST00000494080 SPACA6W5XKT8 324 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms