RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PIP5K1BO14986 540 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 STATHP02808 62 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TTPAP49638 278 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 HMGCS1Q01581 520 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TNK2Q07912 1038 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SF3B4Q15427 424 aaKnown RBP eCLIP10.55□□□□□ -0.724e-9■■■■□ 20.4
MSH5-SAPCD1-207ENST00000493662 CHRNA6Q15825 494 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ARSIQ5FYB1 569 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 KIAA0930Q6ICG6 404 aaPredicted RBP10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 USP45Q70EL2 814 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 C16orf62Q7Z3J2 963 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ANKRD46Q86W74 232 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PIANPQ8IYJ0 282 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PGBD5Q8N414 524 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CHPT1Q8WUD6 406 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FBXL20Q96IG2 436 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FEM1CQ96JP0 617 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 COPS8Q99627 209 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TMEM246Q9BRR3 403 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CLEC4EQ9ULY5 219 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 IFT52Q9Y366 437 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 A0A087X1B8 175 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CENPBD1B2RD01 187 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 WASH3PC4AMC7 463 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RFXAPO00287 272 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 EIF3FO00303 357 aaPredicted RBP10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 AZIN1O14977 448 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 MAPKAPK2P49137 400 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PMS2P3Q13401 168 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TOP3AQ13472 1001 aaPredicted RBP10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TTLL9Q3SXZ7 439 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ATP6AP1LQ52LC2 224 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 KLHL17Q6TDP4 642 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SPESP1Q6UW49 350 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 LILRB4Q8NHJ6 448 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TMEM159Q96B96 161 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 GPR22Q99680 433 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 KIFC1Q9BW19 673 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ITM2CQ9NQX7 267 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 KIAA1522Q9P206 1035 aaPredicted RBP10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 OPTCQ9UBM4 332 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CNOT6Q9ULM6 557 aaKnown RBP10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 OAZ3Q9UMX2 235 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 A6NL46 340 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ADAM23O75077 832 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 EPHX1P07099 455 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TYRP14679 529 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ETV4P43268 484 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 OR2B6P58173 313 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RHDQ02161 417 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SLC13A2Q13183 592 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ATAD3BQ5T9A4 648 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TTC23LQ6PF05 361 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RANBP10Q6VN20 620 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ZYG11AQ6WRX3 759 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 Q6ZVL8 140 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 EFL1Q7Z2Z2 1120 aaKnown RBP10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ANKRD13BQ86YJ7 626 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SLC22A9Q8IVM8 553 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 STYXQ8WUJ0 223 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 NT5C3BQ969T7 300 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RTP4Q96DX8 246 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 IL12RB2Q99665 862 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RERGLQ9H628 205 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 MAGEE1Q9HCI5 957 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CD320Q9NPF0 282 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 OXSMQ9NWU1 459 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ATP6V1HQ9UI12 483 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ANKRD6Q9Y2G4 727 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 LEFTY2O00292 366 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 NDUFS2O75306 463 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 NRIP1P48552 1158 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PRKCQQ04759 706 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 LMAN2Q12907 356 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TCTN1Q2MV58 587 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 DPY19L3Q6ZPD9 716 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RFLNAQ6ZTI6 216 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 UMODL1-AS1Q8N2C9 162 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ZNF276Q8N554 614 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 OR10Q1Q8NGQ4 319 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ASB9Q96DX5 294 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CCDC126Q96EE4 140 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 NODALQ96S42 347 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 NSUN3Q9H649 340 aaKnown RBP10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RPF2Q9H7B2 306 aaKnown RBP10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SH3BP4Q9P0V3 963 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 A0A0C4DFX4 3053 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 LCHNA4D1U4 455 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FKBP9O95302 570 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ENDOUP21128 410 aaKnown RBP10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CHSY3Q70JA7 882 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FKBP9P1Q75LS8 142 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 P2RY8Q86VZ1 359 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RAB43Q86YS6 212 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ZNF486Q96H40 463 aaPredicted RBP10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RIBC2Q9H4K1 309 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SLC28A3Q9HAS3 691 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 EMCNQ9ULC0 261 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RWDD3Q9Y3V2 267 aa10.54□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ANKRD34BA5PLL1 514 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms