RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 SMARCAL1Q9NZC9 954 aa17.81■□□□□ 0.44
HDAC6-231ENST00000488905 DUSP10Q9Y6W6 482 aa17.81■□□□□ 0.44
HDAC6-231ENST00000488905 BTNL10A8MVZ5 291 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 H3BMH7 237 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 QSOX1O00391 747 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 IPO7O95373 1038 aaKnown RBP17.8■□□□□ 0.44
HDAC6-231ENST00000488905 TPH1P17752 444 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 OTX2P32243 289 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 NSG1P42857 185 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 PACS1Q6VY07 963 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 RBMXL3Q8N7X1 1067 aaKnown RBP17.8■□□□□ 0.44
HDAC6-231ENST00000488905 LRRC57Q8N9N7 239 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 FAM71DQ8N9W8 422 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 SSC4DQ8WTU2 575 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 TCTN2Q96GX1 697 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 CDKN2AIPNLQ96HQ2 116 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 SGSM3Q96HU1 749 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 OR2A14Q96R47 310 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 C17orf62Q9BQA9 187 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 PIH1D1Q9NWS0 290 aaKnown RBP17.8■□□□□ 0.44
HDAC6-231ENST00000488905 PLEKHB1Q9UF11 243 aaPredicted RBP17.8■□□□□ 0.44
HDAC6-231ENST00000488905 ASF1AQ9Y294 204 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 EPN1Q9Y6I3 576 aaPredicted RBP17.8■□□□□ 0.44
HDAC6-231ENST00000488905 AP1M2Q9Y6Q5 423 aa17.8■□□□□ 0.44
HDAC6-231ENST00000488905 KLF7O75840 302 aaPredicted RBP17.79■□□□□ 0.44
HDAC6-231ENST00000488905 OR2B3O76000 313 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 METTL18O95568 372 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 AP2A1O95782 977 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 FTH1P02794 183 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 CHRM5P08912 532 aaPredicted RBP17.79■□□□□ 0.44
HDAC6-231ENST00000488905 MSNP26038 577 aaKnown RBP17.79■□□□□ 0.44
HDAC6-231ENST00000488905 GABRA4P48169 554 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 RAPSNQ13702 412 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 ITIH4Q14624 930 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 ZIC1Q15915 447 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 P3H1Q32P28 736 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 SYTL3Q4VX76 610 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 C4orf17Q53FE4 359 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 VWA5B1Q5TIE3 1220 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 RHBDD2Q6NTF9 364 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 UNC5AQ6ZN44 842 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 TMTC1Q8IUR5 882 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 TBC1D21Q8IYX1 336 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 TTC13Q8NBP0 860 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 PROKR1Q8TCW9 393 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 ELMO1Q92556 727 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 PANX2Q96RD6 677 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 SLC29A3Q9BZD2 475 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 CHRNA10Q9GZZ6 450 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 SPHK1Q9NYA1 384 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 REXO2Q9Y3B8 237 aaKnown RBP17.79■□□□□ 0.44
HDAC6-231ENST00000488905 PRSS21Q9Y6M0 314 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 ITPR2Q14571 2701 aa17.79■□□□□ 0.44
HDAC6-231ENST00000488905 MDC1Q14676 2089 aaKnown RBP17.79■□□□□ 0.44
HDAC6-231ENST00000488905 A0A0J9YY10 115 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 CCDC78A2IDD5 438 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 GRID2IPA4D2P6 1211 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 GOLGA6L9A6NEM1 432 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 MROH6A6NGR9 719 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 ZSCAN9O15535 394 aaPredicted RBP17.78■□□□□ 0.44
HDAC6-231ENST00000488905 HCRTR1O43613 425 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 SEMA7AO75326 666 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 PTMAP06454 111 aaKnown RBP17.78■□□□□ 0.44
HDAC6-231ENST00000488905 CBSLP0DN79 551 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 PSMA3P25788 255 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 ACADLP28330 430 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 CBSP35520 551 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 GDF10P55107 478 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 BRD3Q15059 726 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 KYNUQ16719 465 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 C1orf189Q5VU69 101 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 HIST2H2BCQ6DN03 193 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 OR5K2Q8NHB8 316 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 FLVCR1-AS1Q8TAF5 88 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 IP6K3Q96PC2 410 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 GBP5Q96PP8 586 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 ALS2CR12Q96Q35 445 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 LACRTQ9GZZ8 138 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 CUEDC1Q9NWM3 386 aaPredicted RBP17.78■□□□□ 0.44
HDAC6-231ENST00000488905 OR6C2Q9NZP2 312 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 MAP10Q9P2G4 905 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 POLG2Q9UHN1 485 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 GPN3Q9UHW5 284 aaPredicted RBP17.78■□□□□ 0.44
HDAC6-231ENST00000488905 SRPK3Q9UPE1 567 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 TDRKHQ9Y2W6 561 aaKnown RBP17.78■□□□□ 0.44
HDAC6-231ENST00000488905 CNTRLQ7Z7A1 2325 aa17.78■□□□□ 0.44
HDAC6-231ENST00000488905 OR51F1A6NGY5 319 aa17.77■□□□□ 0.44
HDAC6-231ENST00000488905 TCP11X1B4DZS4 312 aa17.77■□□□□ 0.44
HDAC6-231ENST00000488905 RNF224P0DH78 156 aa17.77■□□□□ 0.44
HDAC6-231ENST00000488905 VARSP26640 1264 aaKnown RBP17.77■□□□□ 0.44
HDAC6-231ENST00000488905 FOXN2P32314 431 aa17.77■□□□□ 0.44
HDAC6-231ENST00000488905 FOLR3P41439 243 aa17.77■□□□□ 0.44
HDAC6-231ENST00000488905 KLF1Q13351 362 aaPredicted RBP17.77■□□□□ 0.44
HDAC6-231ENST00000488905 MRPL49Q13405 166 aaKnown RBP17.77■□□□□ 0.44
HDAC6-231ENST00000488905 SSPNQ14714 243 aa17.77■□□□□ 0.44
HDAC6-231ENST00000488905 MLIPQ5VWP3 458 aa17.77■□□□□ 0.44
HDAC6-231ENST00000488905 CLEC1AQ8NC01 280 aa17.77■□□□□ 0.44
HDAC6-231ENST00000488905 SPRTNQ9H040 489 aaPredicted RBP17.77■□□□□ 0.44
HDAC6-231ENST00000488905 C5AR2Q9P296 337 aa17.77■□□□□ 0.44
HDAC6-231ENST00000488905 NDOR1Q9UHB4 597 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms