RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 MAP3K3Q99759 626 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 CTRCQ99895 268 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 TUBB2BQ9BVA1 445 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 ZNF768Q9H5H4 540 aaKnown RBP14.33□□□□□ -0.12
USP4-212ENST00000486549 SLC39A1Q9NY26 324 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 FOXJ2Q9P0K8 574 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 POLG2Q9UHN1 485 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 NFS1Q9Y697 457 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 IGHV5-51A0A0C4DH38 117 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 TLCD2A6NGC4 264 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 EIF4E1BA6NMX2 242 aaKnown RBP14.32□□□□□ -0.12
USP4-212ENST00000486549 C9orf172C9J069 976 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 TOX3O15405 576 aaPredicted RBP14.32□□□□□ -0.12
USP4-212ENST00000486549 KDM1AO60341 852 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 SHMT2P34897 504 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 ARL4DP49703 201 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 CLCN7P51798 805 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 KPNA2P52292 529 aaKnown RBP14.32□□□□□ -0.12
USP4-212ENST00000486549 SH3BP2P78314 561 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 GUCY2DQ02846 1103 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 FOXM1Q08050 763 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 TTLL9Q3SXZ7 439 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 ACSBG2Q5FVE4 666 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 RBM20Q5T481 1227 aaKnown RBP14.32□□□□□ -0.12
USP4-212ENST00000486549 TEDDM1Q5T9Z0 273 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 TMEM164Q5U3C3 297 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 ANKS6Q68DC2 871 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 FBXO38Q6PIJ6 1188 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 ZDHHC24Q6UX98 284 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 UNC5DQ6UXZ4 953 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 DCUN1D3Q8IWE4 304 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 PALM2Q8IXS6 379 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 MMGT1Q8N4V1 131 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 GIMAP7Q8NHV1 300 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 KCNE4Q8WWG9 221 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 KCNJ9Q92806 393 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 PPM1MQ96MI6 270 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 FOPNLQ96NB1 174 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 TAAR9Q96RI9 348 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 AARSD1Q9BTE6 412 aaKnown RBP14.32□□□□□ -0.12
USP4-212ENST00000486549 ZFATQ9P243 1243 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 PCDHGA7Q9Y5G6 932 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 COMMD10Q9Y6G5 202 aa14.32□□□□□ -0.12
USP4-212ENST00000486549 CELSR3Q9NYQ7 3312 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 B4E171 279 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 MATN2O00339 956 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 EIF3HO15372 352 aaKnown RBP eCLIP14.31□□□□□ -0.123e-7■■■■□ 20.2
USP4-212ENST00000486549 VPS26AO75436 327 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 AHSGP02765 367 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 TPBGLP0DKB5 382 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 CDH3P22223 829 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 GABRB3P28472 473 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 ATP5DP30049 168 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 SSTR1P30872 391 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 TSPAN7P41732 249 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 MGAT5Q09328 741 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 GBX1Q14549 363 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 KLHL38Q2WGJ6 581 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 KIAA0408Q6ZU52 694 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 TAX1BP1Q86VP1 789 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 ADGRF3Q8IZF5 1079 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 BMPERQ8N8U9 685 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 GPATCH11Q8N954 259 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 LMNTD1Q8N9Z9 388 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 UBXN4Q92575 508 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 RNF31Q96EP0 1072 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 ELMO2Q96JJ3 720 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 IL17FQ96PD4 163 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 CD180Q99467 661 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 APMAPQ9HDC9 416 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 LATS2Q9NRM7 1088 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 SIDT1Q9NXL6 827 aaKnown RBP14.31□□□□□ -0.12
USP4-212ENST00000486549 POMT2Q9UKY4 750 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 MED16Q9Y2X0 877 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 B3GALT1Q9Y5Z6 326 aa14.31□□□□□ -0.12
USP4-212ENST00000486549 PIPSLA2A3N6 862 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 KRT87PA6NCN2 255 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 C2orf74A8MZ97 194 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 NVLO15381 856 aaKnown RBP14.3□□□□□ -0.12
USP4-212ENST00000486549 PIAS1O75925 651 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 C1orf105O95561 183 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 CHRM5P08912 532 aaPredicted RBP14.3□□□□□ -0.12
USP4-212ENST00000486549 NELFEP18615 380 aaKnown RBP14.3□□□□□ -0.12
USP4-212ENST00000486549 PKLRP30613 574 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 TMPRSS3P57727 454 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 RAB15P59190 212 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 MC2RQ01718 297 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 FRG1Q14331 258 aaKnown RBP14.3□□□□□ -0.12
USP4-212ENST00000486549 KCNAB1Q14722 419 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 KYNUQ16719 465 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 CCSMST1Q4G0I0 132 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 DCAF12Q5T6F0 453 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 TTC23LQ6PF05 361 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 ZFAND4Q86XD8 727 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 CPNE9Q8IYJ1 553 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 C2orf73Q8N5S3 287 aaPredicted RBP14.3□□□□□ -0.12
USP4-212ENST00000486549 CEP112Q8N8E3 955 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 LSM14AQ8ND56 463 aaKnown RBP14.3□□□□□ -0.12
USP4-212ENST00000486549 CD200R1Q8TD46 325 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 KLHL6Q8WZ60 621 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms