RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 DLG3Q92796 817 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 ALKBH8Q96BT7 664 aaKnown RBP11.92□□□□□ -0.5
SDC1-206ENST00000482879 PTERQ96BW5 349 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 TLCD1Q96CP7 247 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 ATP6V1G3Q96LB4 118 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 HGH1Q9BTY7 390 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 SLC12A9Q9BXP2 914 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 TRIM54Q9BYV2 358 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 STN1Q9H668 368 aaKnown RBP11.92□□□□□ -0.5
SDC1-206ENST00000482879 PARVBQ9HBI1 364 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 POT1Q9NUX5 634 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 TMEM216Q9P0N5 145 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 GRID1Q9ULK0 1009 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 RNF112Q9ULX5 631 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 PDE10AQ9Y233 779 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 BTBD3Q9Y2F9 522 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 ACTL7BQ9Y614 415 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 PABPN1LA6NDY0 278 aaKnown RBP11.91□□□□□ -0.5
SDC1-206ENST00000482879 FLRT2O43155 660 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 GDF9O60383 454 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 SYF2O95926 243 aaKnown RBP11.91□□□□□ -0.5
SDC1-206ENST00000482879 HIST1H2AGP0C0S8 130 aaPredicted RBP11.91□□□□□ -0.5
SDC1-206ENST00000482879 MYF5P13349 255 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 CD59P13987 128 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 HIST1H2ADP20671 130 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 GRK6P43250 576 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 KCNC1P48547 511 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 RPIAP49247 311 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 HHEXQ03014 270 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 NR0B2Q15466 257 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 PHKG1Q16816 387 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 TTMPQ5BVD1 217 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 N4BP2L1Q5TBK1 243 aaPredicted RBP11.91□□□□□ -0.5
SDC1-206ENST00000482879 SBSNQ6UWP8 590 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 CDHR3Q6ZTQ4 885 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 FRA10AC1Q70Z53 315 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 GPSM1Q86YR5 675 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 DCUN1D3Q8IWE4 304 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 FAM181AQ8N9Y4 354 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 RHEBL1Q8TAI7 183 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 RHBDD1Q8TEB9 315 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 ZFPM2Q8WW38 1151 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 RAD51AP1Q96B01 352 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 APOPT1Q96IL0 206 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 HIST1H2AHQ96KK5 128 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 APOLD1Q96LR9 279 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 CAMK1GQ96NX5 476 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 HIST1H2AJQ99878 128 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 H2AFJQ9BTM1 129 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 IQCGQ9H095 443 aaKnown RBP11.91□□□□□ -0.5
SDC1-206ENST00000482879 SLC40A1Q9NP59 571 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 KCNK9Q9NPC2 374 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 MKS1Q9NXB0 559 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 UTP6Q9NYH9 597 aaKnown RBP11.91□□□□□ -0.5
SDC1-206ENST00000482879 CIDEBQ9UHD4 219 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 POLG2Q9UHN1 485 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 PADI4Q9UM07 663 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 OARD1Q9Y530 152 aa11.91□□□□□ -0.5
SDC1-206ENST00000482879 CCDC189A1A4V9 331 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 RHPN2P1A8MT19 583 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 HMGB1P1B2RPK0 211 aaPredicted RBP11.9□□□□□ -0.5
SDC1-206ENST00000482879 PPM1DO15297 605 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 KERAO60938 352 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 GUCA1CO95843 209 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 ENO2P09104 434 aaPredicted RBP11.9□□□□□ -0.5
SDC1-206ENST00000482879 FASLGP48023 281 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 CCSMST1Q4G0I0 132 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 TECRLQ5HYJ1 363 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.9□□□□□ -0.5
SDC1-206ENST00000482879 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.9□□□□□ -0.5
SDC1-206ENST00000482879 STPG1Q5TH74 334 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 TMEM26Q6ZUK4 368 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 RBM12BQ8IXT5 1001 aaKnown RBP11.9□□□□□ -0.5
SDC1-206ENST00000482879 FBXO15Q8NCQ5 510 aaPredicted RBP11.9□□□□□ -0.5
SDC1-206ENST00000482879 OR9A1PQ8NGU1 263 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 EXT2Q93063 718 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 SH3KBP1Q96B97 665 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 ATOH8Q96SQ7 321 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 PKP4Q99569 1192 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 MRPL57Q9BQC6 102 aaKnown RBP11.9□□□□□ -0.5
SDC1-206ENST00000482879 MRPL46Q9H2W6 279 aaKnown RBP11.9□□□□□ -0.5
SDC1-206ENST00000482879 C12orf65Q9H3J6 166 aaKnown RBP11.9□□□□□ -0.5
SDC1-206ENST00000482879 KIR3DX1Q9H7L2 352 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 RDH14Q9HBH5 336 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 SSU72Q9NP77 194 aaKnown RBP11.9□□□□□ -0.5
SDC1-206ENST00000482879 ARL15Q9NXU5 204 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 NCKIPSDQ9NZQ3 722 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 CD274Q9NZQ7 290 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 LRIT1Q9P2V4 623 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 XPR1Q9UBH6 696 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 PLAGL1Q9UM63 463 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 PLLPQ9Y342 182 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 GVINP1Q7Z2Y8 2422 aa11.9□□□□□ -0.5
SDC1-206ENST00000482879 FRYLO94915 3013 aa11.89□□□□□ -0.51
SDC1-206ENST00000482879 SNRNP200O75643 2136 aaKnown RBP11.89□□□□□ -0.51
SDC1-206ENST00000482879 LY6G6EA0A0G2JKS1 128 aa11.89□□□□□ -0.51
SDC1-206ENST00000482879 CPED1A4D0V7 1026 aa11.89□□□□□ -0.51
SDC1-206ENST00000482879 KRT87PA6NCN2 255 aa11.89□□□□□ -0.51
SDC1-206ENST00000482879 SYCE1LA8MT33 242 aa11.89□□□□□ -0.51
SDC1-206ENST00000482879 SUPT3HB4E1H0 165 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms