RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 OTUB1Q96FW1 271 aaPredicted RBP13.27□□□□□ -0.28
USP42-206ENST00000479544 SNX27Q96L92 541 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 Q96MT0 163 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 PHOX2BQ99453 314 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 ADAM2Q99965 735 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 A0A0U1RQS6 177 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 ZSCAN5BA6NJL1 495 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 CHRNA1P02708 482 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 EIF2S1P05198 315 aaKnown RBP13.27□□□□□ -0.28
USP42-206ENST00000479544 PSKH1P11801 424 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 DARSP14868 501 aaKnown RBP13.27□□□□□ -0.28
USP42-206ENST00000479544 ABRQ12979 859 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 IL18Q14116 193 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 TBRG1Q3YBR2 411 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 VN1R5Q7Z5H4 357 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 POF1BQ8WVV4 589 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 STARD8Q92502 1023 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 MUC13Q9H3R2 512 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 NSUN3Q9H649 340 aaKnown RBP13.27□□□□□ -0.28
USP42-206ENST00000479544 PDLIM7Q9NR12 457 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 MTMR10Q9NXD2 777 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 PEX16Q9Y5Y5 336 aa13.27□□□□□ -0.28
USP42-206ENST00000479544 SLC1A7O00341 560 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 AXIN1O15169 862 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 CREG1O75629 220 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 RFPL2O75678 378 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 ZNF135P52742 658 aaPredicted RBP13.27□□□□□ -0.29
USP42-206ENST00000479544 NFE2Q16621 373 aaPredicted RBP13.27□□□□□ -0.29
USP42-206ENST00000479544 PLEKHG7Q6ZR37 379 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 SH2D5Q6ZV89 423 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 FAM9CQ8IZT9 166 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 LSMEM2Q8N112 164 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 KRTCAP2Q8N6L1 136 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 MTMR14Q8NCE2 650 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 CDKN2AIPNLQ96HQ2 116 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 GMLQ99445 158 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 MOV10Q9HCE1 1003 aaKnown RBP13.27□□□□□ -0.29
USP42-206ENST00000479544 C1orf109Q9NX04 203 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 AGO1Q9UL18 857 aaKnown RBP13.27□□□□□ -0.29
USP42-206ENST00000479544 HSPB11Q9Y547 144 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 BTBD19C9JJ37 291 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 CKMP06732 381 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 SNRPD2P62316 118 aaKnown RBP13.27□□□□□ -0.29
USP42-206ENST00000479544 SCN1BQ07699 218 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 USP39Q53GS9 565 aaKnown RBP13.27□□□□□ -0.29
USP42-206ENST00000479544 XKR6Q5GH73 641 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 OR4F3Q6IEY1 312 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 ELMSAN1Q6PJG2 1045 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 ZNF517Q6ZMY9 492 aaPredicted RBP13.27□□□□□ -0.29
USP42-206ENST00000479544 CACTIN-AS1Q8N1I8 211 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 TCAIMQ8N3R3 496 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 SVOPLQ8N434 492 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 NUDT8Q8WV74 236 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 ST3GAL5Q9UNP4 418 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 RNF6Q9Y252 685 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 MAP4K5Q9Y4K4 846 aa13.27□□□□□ -0.29
USP42-206ENST00000479544 TAF1LQ8IZX4 1826 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 SHMT2P34897 504 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 GALNT2Q10471 571 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 RAPSNQ13702 412 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 PLEKHG6Q3KR16 790 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 RGMBQ6NW40 437 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 CYS1Q717R9 158 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 SPARTQ8N0X7 666 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 DEPDC4Q8N2C3 294 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 TMEM86AQ8N2M4 240 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 DTWD1Q8N5C7 304 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 DTX3Q8N9I9 347 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 C2CD4AQ8NCU7 369 aaPredicted RBP13.26□□□□□ -0.29
USP42-206ENST00000479544 OR4F6Q8NGB9 312 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 PTCD2Q8WV60 388 aaKnown RBP13.26□□□□□ -0.29
USP42-206ENST00000479544 KAT2AQ92830 837 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 NELL1Q92832 810 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 NMUR1Q9HB89 426 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 CDV3Q9UKY7 258 aaKnown RBP13.26□□□□□ -0.29
USP42-206ENST00000479544 CNOT11Q9UKZ1 510 aaKnown RBP13.26□□□□□ -0.29
USP42-206ENST00000479544 FABP12A6NFH5 140 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 STK16O75716 305 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 NDST3O95803 873 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 IL6P05231 212 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 ITGB1P05556 798 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 PGRP06401 933 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 ACVRL1P37023 503 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.26□□□□□ -0.29
USP42-206ENST00000479544 TARBP2Q15633 366 aaKnown RBP13.26□□□□□ -0.29
USP42-206ENST00000479544 SMN1Q16637 294 aaKnown RBP13.26□□□□□ -0.29
USP42-206ENST00000479544 C2orf73Q8N5S3 287 aaPredicted RBP13.26□□□□□ -0.29
USP42-206ENST00000479544 TOP6BLQ8N6T0 577 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 SLC9A7Q96T83 725 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 MEAF6Q9HAF1 191 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 ING3Q9NXR8 418 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 SNX6Q9UNH7 406 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 ERVK-11Q9UQG0 969 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 TCRBV5S1A1TA0A578 114 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 GSAPA4D1B5 854 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 GABRB3P28472 473 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 GSTM5P46439 218 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 TUBA3CQ13748 450 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 VEPH1Q14D04 833 aa13.26□□□□□ -0.29
USP42-206ENST00000479544 SF3B4Q15427 424 aaKnown RBP eCLIP13.26□□□□□ -0.294e-6■□□□□ 9.9
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms