RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PTGER4P35408 488 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 USP8P40818 1118 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 KCNJ1P48048 391 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 TPD52P55327 224 aaPredicted RBP4.9□□□□□ -1.63
UPF3B-203ENST00000478840 CLDN15P56746 228 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 RPA4Q13156 261 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 NFATC4Q14934 902 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 MDH1BQ5I0G3 518 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 TCTE1Q5JU00 501 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 SYCE2Q6PIF2 218 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 GFRALQ6UXV0 394 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 NUP54Q7Z3B4 507 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 TMPRSS12Q86WS5 348 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 CLYBLQ8N0X4 340 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 CPSF7Q8N684 471 aaKnown RBP4.9□□□□□ -1.63
UPF3B-203ENST00000478840 ANKRD13CQ8N6S4 541 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 AMER3Q8N944 861 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 L3MBTL4Q8NA19 623 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 TMEM255BQ8WV15 326 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 SEMA4DQ92854 862 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 ATP6V0A1Q93050 837 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 ZG16BQ96DA0 208 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 MTBPQ96DY7 904 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 OR1F2PQ96R84 312 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 MYADMQ96S97 322 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 CACNG6Q9BXT2 260 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 MINDY3Q9H8M7 445 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 ACKR4Q9NPB9 350 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 SERINC1Q9NRX5 453 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 IARS2Q9NSE4 1012 aaKnown RBP4.9□□□□□ -1.63
UPF3B-203ENST00000478840 SPIN1Q9Y657 262 aaPredicted RBP4.9□□□□□ -1.63
UPF3B-203ENST00000478840 TEX13DA0A0J9YY54 714 aaPredicted RBP4.89□□□□□ -1.63
UPF3B-203ENST00000478840 HYKKA2RU49 373 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 DUXAA6NLW8 204 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 EIF3DO15371 548 aaKnown RBP eCLIP4.89□□□□□ -1.63
UPF3B-203ENST00000478840 ST8SIA3O43173 380 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 ZBTB14O43829 449 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 H1F0P07305 194 aaKnown RBP4.89□□□□□ -1.63
UPF3B-203ENST00000478840 UROSP10746 265 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 ZNF23P17027 643 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 POLR2CP19387 275 aaPredicted RBP4.89□□□□□ -1.63
UPF3B-203ENST00000478840 ITIH1P19827 911 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 HSD17B3P37058 310 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 MMP15P51511 669 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 ADARP55265 1226 aaKnown RBP4.89□□□□□ -1.63
UPF3B-203ENST00000478840 BPIFB3P59826 476 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 TEFQ10587 303 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 NPTX1Q15818 432 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 LBHQ53QV2 105 aaPredicted RBP4.89□□□□□ -1.63
UPF3B-203ENST00000478840 LRRC73Q5JTD7 316 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 CCDC158Q5M9N0 1113 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 TMEM270Q6UE05 265 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 ASB18Q6ZVZ8 466 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 NUDT13Q86X67 352 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 BMPERQ8N8U9 685 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 SLC20A1Q8WUM9 679 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 SEPT1Q8WYJ6 367 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 BCL2L2Q92843 193 aaPredicted RBP4.89□□□□□ -1.63
UPF3B-203ENST00000478840 RIT1Q92963 219 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 HNRNPABQ99729 332 aaKnown RBP4.89□□□□□ -1.63
UPF3B-203ENST00000478840 SF3B5Q9BWJ5 86 aaKnown RBP4.89□□□□□ -1.63
UPF3B-203ENST00000478840 GTPBP2Q9BX10 602 aaKnown RBP4.89□□□□□ -1.63
UPF3B-203ENST00000478840 VN1R1Q9GZP7 353 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 SLC5A7Q9GZV3 580 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 ARRDC1-AS1Q9H2J1 176 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 ZNF701Q9NV72 531 aaPredicted RBP4.89□□□□□ -1.63
UPF3B-203ENST00000478840 SLCO1C1Q9NYB5 712 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 B3GAT1Q9P2W7 334 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 DLGAP4Q9Y2H0 992 aa4.89□□□□□ -1.63
UPF3B-203ENST00000478840 ZNHIT1O43257 154 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 RNASEH1O60930 286 aaKnown RBP4.88□□□□□ -1.63
UPF3B-203ENST00000478840 WDR1O75083 606 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 LUC7L3O95232 432 aaKnown RBP4.88□□□□□ -1.63
UPF3B-203ENST00000478840 ARRB2P32121 409 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 KCNJ4P48050 445 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 ARCN1P48444 511 aaKnown RBP4.88□□□□□ -1.63
UPF3B-203ENST00000478840 KIAA1024LP59773 190 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 EEF1A1P68104 462 aaKnown RBP4.88□□□□□ -1.63
UPF3B-203ENST00000478840 PRKAA1Q13131 559 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 RPS6KA1Q15418 735 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 TAZQ16635 292 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 EEF1A1P5Q5VTE0 462 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 NRARPQ7Z6K4 114 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 PHLDB2Q86SQ0 1253 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 FJX1Q86VR8 437 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 COMMD2Q86X83 199 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 TMEM219Q86XT9 240 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 PTOV1Q86YD1 416 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 FAM114A1Q8IWE2 563 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 ARHGAP24Q8N264 748 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 ZNF619Q8N2I2 560 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 RDM1Q8NG50 284 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 RNF128Q8TEB7 428 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 RAD9AQ99638 391 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 NEURL2Q9BR09 285 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 MRIQ9BWK5 157 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 KLHL1Q9NR64 748 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 PTGFRNQ9P2B2 879 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 MTUS1Q9ULD2 1270 aa4.88□□□□□ -1.63
UPF3B-203ENST00000478840 OR2W1Q9Y3N9 320 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms