RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 RECKO95980 971 aa13.64□□□□□ -0.23
UPF3A-204ENST00000475218 CHRM5P08912 532 aaPredicted RBP13.64□□□□□ -0.23
UPF3A-204ENST00000475218 OR56A5P0C7T3 313 aa13.64□□□□□ -0.23
UPF3A-204ENST00000475218 PTPN4P29074 926 aa13.64□□□□□ -0.23
UPF3A-204ENST00000475218 CSE1LP55060 971 aaKnown RBP13.64□□□□□ -0.23
UPF3A-204ENST00000475218 PCID2Q5JVF3 399 aa13.64□□□□□ -0.23
UPF3A-204ENST00000475218 TMTC4Q5T4D3 741 aa13.64□□□□□ -0.23
UPF3A-204ENST00000475218 ZNF385CQ66K41 422 aaPredicted RBP13.64□□□□□ -0.23
UPF3A-204ENST00000475218 NLRP9Q7RTR0 991 aa13.64□□□□□ -0.23
UPF3A-204ENST00000475218 DSELQ8IZU8 1212 aa13.64□□□□□ -0.23
UPF3A-204ENST00000475218 KRT222Q8N1A0 295 aa13.64□□□□□ -0.23
UPF3A-204ENST00000475218 TRIM58Q8NG06 486 aa13.64□□□□□ -0.23
UPF3A-204ENST00000475218 C9orf43Q8TAL5 461 aaPredicted RBP13.64□□□□□ -0.23
UPF3A-204ENST00000475218 AP1M1Q9BXS5 423 aa13.64□□□□□ -0.23
UPF3A-204ENST00000475218 PCMTD2Q9NV79 361 aa13.64□□□□□ -0.23
UPF3A-204ENST00000475218 SYBUQ9NX95 663 aa13.64□□□□□ -0.23
UPF3A-204ENST00000475218 SEC16AO15027 2179 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 MED13Q9UHV7 2174 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 PIPSLA2A3N6 862 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 CDC14CA4D256 554 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 TMEM150CB9EJG8 249 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 MEN1O00255 615 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 CEP104O60308 925 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 GAS8O95995 478 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 MGAT1P26572 445 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 AOAHP28039 575 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 SHMT2P34897 504 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 PRAMEP78395 509 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 COLEC12Q5KU26 742 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 IZUMO3Q5VZ72 239 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 FAM198BQ6UWH4 519 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 CES3Q6UWW8 571 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 ATG14Q6ZNE5 492 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 FAM20CQ8IXL6 584 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 LINC01555Q8NAE3 123 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 PPHLN1Q8NEY8 458 aaKnown RBP13.63□□□□□ -0.23
UPF3A-204ENST00000475218 ADAMTS17Q8TE56 1095 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 TRIM56Q9BRZ2 755 aaKnown RBP13.63□□□□□ -0.23
UPF3A-204ENST00000475218 TRIM55Q9BYV6 548 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 CATSPERZQ9NTU4 200 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 HEMK1Q9Y5R4 338 aaPredicted RBP13.63□□□□□ -0.23
UPF3A-204ENST00000475218 CD3EAPO15446 510 aaKnown RBP13.63□□□□□ -0.23
UPF3A-204ENST00000475218 DNAJB5O75953 348 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 WISP1O95388 367 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 PDGFAP04085 211 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 PMS2P54278 862 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 BASP1P80723 227 aaKnown RBP13.63□□□□□ -0.23
UPF3A-204ENST00000475218 HSPA14Q0VDF9 509 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 UGT8Q16880 541 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 SYTL3Q4VX76 610 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 FASTKD1Q53R41 847 aaKnown RBP13.63□□□□□ -0.23
UPF3A-204ENST00000475218 ZNF449Q6P9G9 518 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 MPP5Q8N3R9 675 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 MR1Q95460 341 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.63□□□□□ -0.23
UPF3A-204ENST00000475218 MFSD3Q96ES6 412 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 MS4A14Q96JA4 679 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 KIFC1Q9BW19 673 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 CARD6Q9BX69 1037 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 GPR87Q9BY21 358 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 EPN3Q9H201 632 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 CIDEBQ9UHD4 219 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 TTC7AQ9ULT0 858 aaPredicted RBP13.63□□□□□ -0.23
UPF3A-204ENST00000475218 POLHQ9Y253 713 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 FARSAQ9Y285 508 aaKnown RBP13.63□□□□□ -0.23
UPF3A-204ENST00000475218 TP53TG5Q9Y2B4 290 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 TDRKHQ9Y2W6 561 aaKnown RBP13.63□□□□□ -0.23
UPF3A-204ENST00000475218 NEU2Q9Y3R4 380 aa13.63□□□□□ -0.23
UPF3A-204ENST00000475218 TNRC6AQ8NDV7 1962 aaKnown RBP13.62□□□□□ -0.23
UPF3A-204ENST00000475218 KRT87PA6NCN2 255 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 AVILO75366 819 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 SLCO2B1O94956 709 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 TPSB2P20231 275 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 PKLRP30613 574 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 MAGEA6P43360 314 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 KCNJ11Q14654 390 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 TRIP13Q15645 432 aaPredicted RBP13.62□□□□□ -0.23
UPF3A-204ENST00000475218 TPSAB1Q15661 275 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 DEFB110Q30KQ9 67 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 PTCHD3Q3KNS1 767 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 ANKRD22Q5VYY1 191 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 CPZQ66K79 652 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 SPNS2Q8IVW8 549 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 APLFQ8IW19 511 aaPredicted RBP13.62□□□□□ -0.23
UPF3A-204ENST00000475218 TMEM151BQ8IW70 566 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 RASGEF1CQ8N431 466 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 C19orf47Q8N9M1 422 aaKnown RBP13.62□□□□□ -0.23
UPF3A-204ENST00000475218 IL22Q9GZX6 179 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 OR6C2Q9NZP2 312 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 POLG2Q9UHN1 485 aa13.62□□□□□ -0.23
UPF3A-204ENST00000475218 PRMT5O14744 637 aaPredicted RBP13.61□□□□□ -0.23
UPF3A-204ENST00000475218 TMEM63AO94886 807 aa13.61□□□□□ -0.23
UPF3A-204ENST00000475218 NPY2RP49146 381 aa13.61□□□□□ -0.23
UPF3A-204ENST00000475218 PLOD1Q02809 727 aaPredicted RBP13.61□□□□□ -0.23
UPF3A-204ENST00000475218 TLE1Q04724 770 aa13.61□□□□□ -0.23
UPF3A-204ENST00000475218 KYNUQ16719 465 aa13.61□□□□□ -0.23
UPF3A-204ENST00000475218 DNAJC21Q5F1R6 531 aaKnown RBP13.61□□□□□ -0.23
UPF3A-204ENST00000475218 CTSL3PQ5NE16 218 aa13.61□□□□□ -0.23
UPF3A-204ENST00000475218 LRRC8BQ6P9F7 803 aa13.61□□□□□ -0.23
UPF3A-204ENST00000475218 C4orf22Q6V702 233 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms