RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 FOXO3O43524 673 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 AKAP8O43823 692 aaKnown RBP3.42□□□□□ -1.86
UBR3-208ENST00000474426 PRAMEF2O60811 474 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 B4GALT2O60909 372 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 ITGA10O75578 1167 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 RGS9O75916 674 aaPredicted RBP3.42□□□□□ -1.86
UBR3-208ENST00000474426 MT-ATP6P00846 226 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 PRKCBP05771 671 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 PROS1P07225 676 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 ABHD2P08910 425 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 HOXD4P09016 255 aaPredicted RBP3.42□□□□□ -1.86
UBR3-208ENST00000474426 UROSP10746 265 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 TFE3P19532 575 aaPredicted RBP3.42□□□□□ -1.86
UBR3-208ENST00000474426 PIK3R1P27986 724 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 MCM7P33993 719 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 PXNP49023 591 aaPredicted RBP3.42□□□□□ -1.86
UBR3-208ENST00000474426 MAPK12P53778 367 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 GNGT1P63211 74 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 SMAD3P84022 425 aaKnown RBP3.42□□□□□ -1.86
UBR3-208ENST00000474426 RESTQ13127 1097 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 MVPQ14764 893 aaKnown RBP3.42□□□□□ -1.86
UBR3-208ENST00000474426 HEPACAMQ14CZ8 416 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 MED22Q15528 200 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 ZBTB6Q15916 424 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 AP5B1Q2VPB7 878 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 ALKBH6Q3KRA9 238 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 USP41Q3LFD5 358 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 CHRFAM7AQ494W8 412 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 COQ5Q5HYK3 327 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 GPR107Q5VW38 600 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 SPESP1Q6UW49 350 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 C1orf210Q8IVY1 113 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 ADGRF4Q8IZF3 695 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 ADGRF2Q8IZF7 708 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 CENPSQ8N2Z9 138 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 C1orf52Q8N6N3 182 aaKnown RBP3.42□□□□□ -1.86
UBR3-208ENST00000474426 BCL2L2Q92843 193 aaPredicted RBP3.42□□□□□ -1.86
UBR3-208ENST00000474426 LINC00615Q96LM1 132 aaPredicted RBP3.42□□□□□ -1.86
UBR3-208ENST00000474426 KCNA7Q96RP8 456 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 CLSTN3Q9BQT9 956 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 OSBPL8Q9BZF1 889 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 BTBD1Q9H0C5 482 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 WWP1Q9H0M0 922 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 UPF3AQ9H1J1 476 aaKnown RBP3.42□□□□□ -1.86
UBR3-208ENST00000474426 OR2AG1Q9H205 316 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 OR52A5Q9H2C5 316 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 CAB39LQ9H9S4 337 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 ABCB8Q9NUT2 735 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 NKIRAS1Q9NYS0 192 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 ARL2BPQ9Y2Y0 163 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 CDY2AQ9Y6F7 541 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 POGZQ7Z3K3 1410 aa3.42□□□□□ -1.86
UBR3-208ENST00000474426 NUP155O75694 1391 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 VPS37CA5D8V6 355 aaPredicted RBP3.41□□□□□ -1.86
UBR3-208ENST00000474426 TCAF2A6NFQ2 919 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 E5RI56 91 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 NPIPA2E9PIF3 369 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 CYR61O00622 381 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 CST8O60676 142 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 CPNE3O75131 537 aaKnown RBP3.41□□□□□ -1.86
UBR3-208ENST00000474426 LYPLA2O95372 231 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 OAS1P00973 400 aaKnown RBP3.41□□□□□ -1.86
UBR3-208ENST00000474426 ANXA5P08758 320 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 INHBBP09529 407 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 ZNF7P17097 686 aaPredicted RBP3.41□□□□□ -1.86
UBR3-208ENST00000474426 HIBADHP31937 336 aaKnown RBP3.41□□□□□ -1.86
UBR3-208ENST00000474426 GRK5P34947 590 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 RPL35P42766 123 aaKnown RBP3.41□□□□□ -1.86
UBR3-208ENST00000474426 JAM2P57087 298 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 TMEM33P57088 247 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 CSNK1G2P78368 415 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 CACNG1Q06432 222 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 ACSM1Q08AH1 577 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 STX3Q13277 289 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 GAMTQ14353 236 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 TAF1BQ53T94 588 aaPredicted RBP3.41□□□□□ -1.86
UBR3-208ENST00000474426 SEL1L3Q68CR1 1132 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 NUDT18Q6ZVK8 323 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 USP45Q70EL2 814 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 SYVN1Q86TM6 617 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 VRK2Q86Y07 508 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 FRMD1Q8N878 549 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 OR10A7Q8NGE5 316 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 MITD1Q8WV92 249 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 KBTBD7Q8WVZ9 684 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 KLHL6Q8WZ60 621 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 ATOH1Q92858 354 aaPredicted RBP3.41□□□□□ -1.86
UBR3-208ENST00000474426 TMCO6Q96DC7 493 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 RRNAD1Q96FB5 475 aaKnown RBP3.41□□□□□ -1.86
UBR3-208ENST00000474426 BSCL2Q96G97 398 aaPredicted RBP3.41□□□□□ -1.86
UBR3-208ENST00000474426 APIPQ96GX9 242 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 ZSWIM3Q96MP5 696 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 GAL3ST4Q96RP7 486 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 CRBNQ96SW2 442 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 MRPL13Q9BYD1 178 aaKnown RBP3.41□□□□□ -1.86
UBR3-208ENST00000474426 TRIM31Q9BZY9 425 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 EPN3Q9H201 632 aa3.41□□□□□ -1.86
UBR3-208ENST00000474426 TAF1DQ9H5J8 278 aaPredicted RBP3.41□□□□□ -1.86
UBR3-208ENST00000474426 ZNF552Q9H707 407 aaPredicted RBP3.41□□□□□ -1.86
UBR3-208ENST00000474426 SMURF2Q9HAU4 748 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms