RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SLC30A6Q6NXT4 461 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 RPUSD3Q6P087 351 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 CCDC190Q86UF4 302 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 TICAM2Q86XR7 235 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 CEP97Q8IW35 865 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 MCEMP1Q8IX19 187 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 SYT2Q8N9I0 419 aaPredicted RBP2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 AVL9Q8NBF6 648 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 KCTD6Q8NC69 237 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 GSDMBQ8TAX9 411 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 TMCO6Q96DC7 493 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 OXNAD1Q96HP4 312 aaPredicted RBP2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 CEP295NLQ96MC4 621 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 SMC6Q96SB8 1091 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 GFI1Q99684 422 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 APOL6Q9BWW8 343 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 FGFBP2Q9BYJ0 223 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 TXLNGYQ9BZA5 131 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 TMEM39BQ9GZU3 492 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 PPIL3Q9H2H8 161 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 DNAJC18Q9H819 358 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 TRPC7Q9HCX4 862 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 PSD3Q9NYI0 1048 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 DBNLQ9UJU6 430 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 SEC23IPQ9Y6Y8 1000 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 PRAG1Q86YV5 1406 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 LOC100509620A0A075B734 347 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 hCG_1809904A0A1W2PP81 198 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 A0A1W2PPE2 198 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 A0A1W2PR64 198 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 TMEM8BA6NDV4 472 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 J3QR06 171 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 ZNF217O75362 1048 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 CSPG5O95196 566 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 NGFP01138 241 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 GH2P01242 217 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 HMBSP08397 361 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 FRMD6-AS1P0C7T7 363 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 LIFP15018 202 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 HRH2P25021 359 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 ITGA3P26006 1051 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 LMAN1P49257 510 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 PRPF4BQ13523 1007 aaKnown RBP2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 DUOXA1Q1HG43 343 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 TMEM266Q2M3C6 531 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 ADALQ6DHV7 355 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 PAPD4Q6PIY7 484 aaKnown RBP2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 TPRG1Q6ZUI0 275 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 DENND5BQ6ZUT9 1274 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 C11orf53Q8IXP5 236 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 MINDY1Q8N5J2 469 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 EMC1Q8N766 993 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 SLC38A9Q8NBW4 561 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 CCDC191Q8NCU4 936 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 MRGPRDQ8TDS7 321 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 PTPMT1Q8WUK0 201 aaPredicted RBP2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 ZNF622Q969S3 477 aaKnown RBP eCLIP2.79□□□□□ -1.964e-8■■■□□ 15.7
CCDC88A-212ENST00000474059 PRMT6Q96LA8 375 aaPredicted RBP2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 CDRT15Q96T59 188 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 DDOQ99489 341 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 SEMA3CQ99985 751 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 RTN4RQ9BZR6 473 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 APOBEC3GQ9HC16 384 aaKnown RBP2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 SLC35C2Q9NQQ7 365 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 SLC38A7Q9NVC3 462 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 TRMT1Q9NXH9 659 aaKnown RBP2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 CPSF2Q9P2I0 782 aaKnown RBP2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 NFKBIL1Q9UBC1 381 aaPredicted RBP2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 TSPYL4Q9UJ04 414 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 B3GALT5Q9Y2C3 310 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 TMEM184BQ9Y519 407 aaPredicted RBP2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 PCDHGA5Q9Y5G8 931 aa2.79□□□□□ -1.96
CCDC88A-212ENST00000474059 ASTN2O75129 1339 aaPredicted RBP2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 GPR75-ASB3A0A0A6YYF3 556 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 PLOD2O00469 737 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 UBE2CO00762 179 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 ZWINTO95229 277 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 EML2O95834 649 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 BCL10O95999 233 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 KRT19P08727 400 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 NMBRP28336 390 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 SLC6A12P48065 614 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 LIG4P49917 911 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 PPP5CP53041 499 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 SNRPD1P62314 119 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 UBXN2AP68543 259 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 AIMP1Q12904 312 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 MVPQ14764 893 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 MEP1AQ16819 746 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 INTS8Q75QN2 995 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 LDB1Q86U70 411 aaPredicted RBP2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 Q8N377 158 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 GUF1Q8N442 669 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 ZNF611Q8N823 705 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 POMGNT2Q8NAT1 580 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 POGLUT1Q8NBL1 392 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 MCUQ8NE86 351 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 DACH2Q96NX9 599 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 AGAP3Q96P47 875 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 MRPL1Q9BYD6 325 aaKnown RBP2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms