RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 AFTPHQ6ULP2 937 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 PPP1R21Q6ZMI0 780 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 UNC5AQ6ZN44 842 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 TRIM73Q86UV7 250 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 SYTL1Q8IYJ3 562 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 TBC1D21Q8IYX1 336 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 C19orf47Q8N9M1 422 aaKnown RBP18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 OR5K2Q8NHB8 316 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 CLIP3Q96DZ5 547 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 OR2A14Q96R47 310 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 NLNQ9BYT8 704 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 ACTR5Q9H9F9 607 aaPredicted RBP18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 FAM60AQ9NP50 221 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 CASS4Q9NQ75 786 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 RAB6BQ9NRW1 208 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 SPHK1Q9NYA1 384 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 GUCA1BQ9UMX6 200 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 TEX15Q9BXT5 2789 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 H3BMH7 237 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 HCRTR1O43613 425 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 CHRM5P08912 532 aaPredicted RBP18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 OR56A5P0C7T3 313 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 ADRA1DP25100 572 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 PTGIRP43119 386 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 ITGA1P56199 1179 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 SNX1Q13596 522 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 SIX1Q15475 284 aaPredicted RBP18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 PTCHD3Q3KNS1 767 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 SYTL3Q4VX76 610 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 ZNF385CQ66K41 422 aaPredicted RBP18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 TSGA10Q9BZW7 698 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 TCFL5Q9UL49 500 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 SNX7Q9UNH6 387 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 ZNF148Q9UQR1 794 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 CDYLQ9Y232 598 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 PLAAQ9Y263 795 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 TCAF1Q9Y4C2 921 aa18.17■□□□□ 0.5
CCDC88B-206ENST00000473405 ARGFXA6NJG6 315 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 E7EVH7 732 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 GAS8O95995 478 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 PEBP1P30086 187 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 GABRA4P48169 554 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 DEFB110Q30KQ9 67 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 MEI1Q5TIA1 1274 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 LYPLAL1Q5VWZ2 237 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 OR4L1Q8NH43 312 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 LKAAEAR1Q8TD35 194 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 SGSM3Q96HU1 749 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 ING2Q9H160 280 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 MLXIPLQ9NP71 852 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 OR6C2Q9NZP2 312 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 POLG2Q9UHN1 485 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 SERTAD3Q9UJW9 196 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 PLAGL1Q9UM63 463 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 TDRKHQ9Y2W6 561 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 NUP210LQ5VU65 1888 aa18.16■□□□□ 0.5
CCDC88B-206ENST00000473405 SPTBN1Q01082 2364 aaKnown RBP18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 E7EQ34 232 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 MAP3K7O43318 606 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 ZNF749O43361 778 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 KRT86O43790 486 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 APRTP07741 180 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 ZSCAN5DPP0CG00 497 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 CCR7P32248 378 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 PLOD1Q02809 727 aaPredicted RBP18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 NCF4Q15080 339 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 VRK3Q8IV63 474 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 SLC22A15Q8IZD6 547 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 TEX19Q8NA77 164 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 OR6P1Q8NGX9 317 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 MIB2Q96AX9 1013 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 TCTN2Q96GX1 697 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 MENTQ9BUN1 341 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 CHRNA10Q9GZZ6 450 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 MARCH4Q9P2E8 410 aaPredicted RBP18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 PCDHGA9Q9Y5G4 932 aaKnown RBP18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 PCM1Q15154 2024 aa18.15■□□□□ 0.5
CCDC88B-206ENST00000473405 A0A0J9YY10 115 aa18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 CLEC18AA5D8T8 446 aa18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 CTSBP07858 339 aa18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 RPL22P35268 128 aaKnown RBP18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 CSE1LP55060 971 aaKnown RBP18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 CLEC18BQ6UXF7 455 aa18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 NLRP9Q7RTR0 991 aa18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 CCDC89Q8N998 374 aa18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 LINC01555Q8NAE3 123 aa18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 CLEC18CQ8NCF0 446 aa18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 PEX13Q92968 403 aa18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 DPH2Q9BQC3 489 aaPredicted RBP18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 AP1M1Q9BXS5 423 aa18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 ACSS2Q9NR19 701 aa18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 PAK5Q9P286 719 aa18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 SHANK1Q9Y566 2161 aa18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 UNC79Q9P2D8 2635 aa18.14■□□□□ 0.49
CCDC88B-206ENST00000473405 IQCF5A8MTL0 148 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 GPC4O75487 556 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 CEACAM4O75871 244 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 OR2B3O76000 313 aa18.13■□□□□ 0.49
CCDC88B-206ENST00000473405 TMEM63AO94886 807 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms