RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 OR51B5Q9H339 312 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 KCTD5Q9NXV2 234 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 PDE10AQ9Y233 779 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 H3BM21 787 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 HS6ST1O60243 411 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 PDYNP01213 254 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 HKDC1Q2TB90 917 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 CYHR1Q6ZMK1 362 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 CYP2U1Q7Z449 544 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 C12orf40Q86WS4 652 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 OR4K1Q8NGD4 311 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 OR2T34Q8NGX1 318 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 OR2T3Q8NH03 318 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 HHIPL1Q96JK4 782 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 SGK2Q9HBY8 427 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 ADGRE2Q9UHX3 823 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 TNPO3Q9Y5L0 923 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 OAS3Q9Y6K5 1087 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 E2F3O00716 465 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 CLDN9O95484 217 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 ALPPL2P10696 532 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 PBX2P40425 430 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 RFX3P48380 749 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 CLCN7P51798 805 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 CHN2P52757 468 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 PRKAG1P54619 331 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 PIGFQ07326 219 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 ANKRD34AQ69YU3 496 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 DUS1LQ6P1R4 473 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 AAGABQ6PD74 315 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 RBM44Q6ZP01 1051 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 ADGRD2Q7Z7M1 963 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 PDSS2Q86YH6 399 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 MRPL43Q8N983 215 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 OR2T12Q8NG77 320 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 OR2A12Q8NGT7 310 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 OR52J3Q8NH60 311 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 ZDHHC3Q9NYG2 299 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 FNIP2Q9P278 1114 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 C5AR2Q9P296 337 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 ANAPC2Q9UJX6 822 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 SARDHQ9UL12 918 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 DLGAP4Q9Y2H0 992 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 PCDHB1Q9Y5F3 818 aa13.43□□□□□ -0.26
CCDC88A-211ENST00000471947 RTCAO00442 366 aaKnown RBP13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 PLOD2O00469 737 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 FAM58BPP0C7Q3 252 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 ATP1B2P14415 290 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 ALOX15P16050 662 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 IGFBP4P22692 258 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 SLC6A2P23975 617 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 ERVK-8P63133 956 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 PELI3Q8N2H9 469 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 OR7A2PQ8NGA2 310 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 FIBINQ8TAL6 211 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 XKR8Q9H6D3 395 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 ERVW-1Q9UQF0 538 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 MIA3Q5JRA6 1907 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 H3BNX3 289 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 LDLRP01130 860 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 PTNP21246 168 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 CD72P21854 359 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 BMPR1AP36894 532 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 PWP1Q13610 501 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 LRP8Q14114 963 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 TMEM215Q68D42 235 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 TTC23LQ6PF05 361 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 SBSNQ6UWP8 590 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 ANKRD33Q7Z3H0 272 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 NXPE3Q969Y0 559 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 SCRN2Q96FV2 425 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 HAUS8Q9BT25 410 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 CHID1Q9BWS9 393 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 NUDT4Q9NZJ9 180 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 SOCS2O14508 198 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 RFXANKO14593 260 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 BCAS2O75934 225 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 RECQL5O94762 991 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 ADH5P11766 374 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 ADARP55265 1226 aaKnown RBP13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 SIM2Q14190 667 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 PCBP2Q15366 365 aaKnown RBP eCLIP13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 TYSND1Q2T9J0 566 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 SPPL2AQ8TCT8 520 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 APIPQ96GX9 242 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 MYRFLQ96LU7 910 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 INPP5KQ9BT40 448 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 SORBS1Q9BX66 1292 aaKnown RBP13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 ZBP1Q9H171 429 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 SMURF2Q9HAU4 748 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 UTS2RQ9UKP6 389 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 KLHL20Q9Y2M5 609 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 OR1A2Q9Y585 309 aa13.42□□□□□ -0.26
CCDC88A-211ENST00000471947 KCNH1O95259 989 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 TSPAN12O95859 305 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 C1QCP02747 245 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 HOXB8P17481 243 aaPredicted RBP13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 SPINT3P49223 89 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 LSM3P62310 102 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 C9orf50Q5SZB4 431 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms