RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 PEX26Q7Z412 305 aa20.37■□□□□ 0.85
COL9A3-207ENST00000467819 KIAA1328Q86T90 577 aa20.37■□□□□ 0.85
COL9A3-207ENST00000467819 PSMG3-AS1Q96PY0 264 aa20.37■□□□□ 0.85
COL9A3-207ENST00000467819 TMEM121Q9BTD3 319 aa20.37■□□□□ 0.85
COL9A3-207ENST00000467819 LRRC4CQ9HCJ2 640 aa20.37■□□□□ 0.85
COL9A3-207ENST00000467819 SORBS2O94875 1100 aaKnown RBP20.36■□□□□ 0.85
COL9A3-207ENST00000467819 AP2A1O95782 977 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 FTH1P02794 183 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 HBQ1P09105 142 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 OTX2P32243 289 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 SHMT2P34897 504 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 NSG1P42857 185 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 RAPSNQ13702 412 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 ITIH4Q14624 930 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 SYTL3Q4VX76 610 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 PRR30Q53SZ7 412 aaPredicted RBP20.36■□□□□ 0.85
COL9A3-207ENST00000467819 C1orf189Q5VU69 101 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 ZNF385CQ66K41 422 aaPredicted RBP20.36■□□□□ 0.85
COL9A3-207ENST00000467819 MED25Q71SY5 747 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 RAB43Q86YS6 212 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 UBL4BQ8N7F7 174 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 TMEM102Q8N9M5 508 aaPredicted RBP20.36■□□□□ 0.85
COL9A3-207ENST00000467819 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.36■□□□□ 0.85
COL9A3-207ENST00000467819 DPH2Q9BQC3 489 aaPredicted RBP20.36■□□□□ 0.85
COL9A3-207ENST00000467819 SPHK1Q9NYA1 384 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 PLAGL1Q9UM63 463 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 PADI2Q9Y2J8 665 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 MAP4K5Q9Y4K4 846 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 PCDHGB7Q9Y5F8 929 aa20.36■□□□□ 0.85
COL9A3-207ENST00000467819 HIVEP3Q5T1R4 2406 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 NUP210LQ5VU65 1888 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 TCRBV7S2A1N4TA0A589 114 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 CCDC162PA2VCL2 907 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 QSOX1O00391 747 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 PSMD3O43242 534 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 HCRTR1O43613 425 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 DPM1O60762 260 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 OR2B3O76000 313 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 AGFG2O95081 481 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 FTCDO95954 541 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 CHRM5P08912 532 aaPredicted RBP20.35■□□□□ 0.85
COL9A3-207ENST00000467819 CBSLP0DN79 551 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 ACADLP28330 430 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 FOXN2P32314 431 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 CBSP35520 551 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 RRADP55042 308 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 ZIC1Q15915 447 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 MLIPQ5VWP3 458 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 JMJD6Q6NYC1 403 aaPredicted RBP20.35■□□□□ 0.85
COL9A3-207ENST00000467819 OR52K1Q8NGK4 314 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 TCTN2Q96GX1 697 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 OR2A14Q96R47 310 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 SPRTNQ9H040 489 aaPredicted RBP20.35■□□□□ 0.85
COL9A3-207ENST00000467819 GPR83Q9NYM4 423 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 MAP10Q9P2G4 905 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 IMPACTQ9P2X3 320 aa20.35■□□□□ 0.85
COL9A3-207ENST00000467819 MROH6A6NGR9 719 aa20.34■□□□□ 0.85
COL9A3-207ENST00000467819 CSE1LP55060 971 aaKnown RBP20.34■□□□□ 0.85
COL9A3-207ENST00000467819 KLF1Q13351 362 aaPredicted RBP20.34■□□□□ 0.85
COL9A3-207ENST00000467819 INPP5JQ15735 1006 aaPredicted RBP20.34■□□□□ 0.85
COL9A3-207ENST00000467819 KYNUQ16719 465 aa20.34■□□□□ 0.85
COL9A3-207ENST00000467819 FHL5Q5TD97 284 aa20.34■□□□□ 0.85
COL9A3-207ENST00000467819 PACS1Q6VY07 963 aa20.34■□□□□ 0.85
COL9A3-207ENST00000467819 TBC1D21Q8IYX1 336 aa20.34■□□□□ 0.85
COL9A3-207ENST00000467819 DNAAF3Q8N9W5 541 aa20.34■□□□□ 0.85
COL9A3-207ENST00000467819 GLIS1Q8NBF1 620 aa20.34■□□□□ 0.85
COL9A3-207ENST00000467819 SLC35B2Q8TB61 432 aa20.34■□□□□ 0.85
COL9A3-207ENST00000467819 SGSM3Q96HU1 749 aa20.34■□□□□ 0.85
COL9A3-207ENST00000467819 DHRS4Q9BTZ2 278 aa20.34■□□□□ 0.85
COL9A3-207ENST00000467819 SLAMF7Q9NQ25 335 aa20.34■□□□□ 0.85
COL9A3-207ENST00000467819 IRAK4Q9NWZ3 460 aa20.34■□□□□ 0.85
COL9A3-207ENST00000467819 POLG2Q9UHN1 485 aa20.34■□□□□ 0.85
COL9A3-207ENST00000467819 GPN3Q9UHW5 284 aaPredicted RBP20.34■□□□□ 0.85
COL9A3-207ENST00000467819 PCM1Q15154 2024 aa20.33■□□□□ 0.85
COL9A3-207ENST00000467819 A0A0J9YY10 115 aa20.33■□□□□ 0.85
COL9A3-207ENST00000467819 SLC5A10A0PJK1 596 aa20.33■□□□□ 0.85
COL9A3-207ENST00000467819 MIF4GDA9UHW6 222 aaKnown RBP20.33■□□□□ 0.85
COL9A3-207ENST00000467819 CTSBP07858 339 aa20.33■□□□□ 0.85
COL9A3-207ENST00000467819 OR56A5P0C7T3 313 aa20.33■□□□□ 0.85
COL9A3-207ENST00000467819 TPBGLP0DKB5 382 aa20.33■□□□□ 0.85
COL9A3-207ENST00000467819 SLC9A5Q14940 896 aa20.33■□□□□ 0.85
COL9A3-207ENST00000467819 SLC6A19Q695T7 634 aa20.33■□□□□ 0.85
COL9A3-207ENST00000467819 LINC00523Q86TU6 105 aa20.33■□□□□ 0.85
COL9A3-207ENST00000467819 RBMXL3Q8N7X1 1067 aaKnown RBP20.33■□□□□ 0.85
COL9A3-207ENST00000467819 Q8NA96 180 aa20.33■□□□□ 0.85
COL9A3-207ENST00000467819 OR5K2Q8NHB8 316 aa20.33■□□□□ 0.85
COL9A3-207ENST00000467819 FLVCR1-AS1Q8TAF5 88 aa20.33■□□□□ 0.85
COL9A3-207ENST00000467819 MRFAP1L1Q96HT8 127 aa20.33■□□□□ 0.85
COL9A3-207ENST00000467819 DHCR7Q9UBM7 475 aaKnown RBP20.33■□□□□ 0.85
COL9A3-207ENST00000467819 PTRH2Q9Y3E5 179 aaKnown RBP20.33■□□□□ 0.85
COL9A3-207ENST00000467819 AP1M2Q9Y6Q5 423 aa20.33■□□□□ 0.85
COL9A3-207ENST00000467819 A0A0U1RQJ8 604 aa20.32■□□□□ 0.84
COL9A3-207ENST00000467819 ISM1B1AKI9 464 aa20.32■□□□□ 0.84
COL9A3-207ENST00000467819 BHMG1C9JSJ3 638 aaPredicted RBP20.32■□□□□ 0.84
COL9A3-207ENST00000467819 H3BMH7 237 aa20.32■□□□□ 0.84
COL9A3-207ENST00000467819 OR1I1O60431 355 aa20.32■□□□□ 0.84
COL9A3-207ENST00000467819 KLF7O75840 302 aaPredicted RBP20.32■□□□□ 0.84
COL9A3-207ENST00000467819 PSMA3P25788 255 aa20.32■□□□□ 0.84
COL9A3-207ENST00000467819 GABRA4P48169 554 aa20.32■□□□□ 0.84
COL9A3-207ENST00000467819 RHBDD2Q6NTF9 364 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms