RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 IRGCQ6NXR0 463 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 PAQR3Q6TCH7 311 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 SLITRK4Q8IW52 837 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 NKAPQ8N5F7 415 aaKnown RBP19.23■□□□□ 0.67
COL9A3-204ENST00000463487 JPH3Q8WXH2 748 aaPredicted RBP19.23■□□□□ 0.67
COL9A3-204ENST00000463487 NXPE2Q96DL1 559 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 CCDC74BQ96LY2 380 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 TGM7Q96PF1 710 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 OGFRQ9NZT2 677 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 LNPEPQ9UIQ6 1025 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 ZNF839A8K0R7 811 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 C2orf74A8MZ97 194 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 PSIP1O75475 530 aaKnown RBP19.22■□□□□ 0.67
COL9A3-204ENST00000463487 RASSF9O75901 435 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 TOP3BO95985 862 aaKnown RBP19.22■□□□□ 0.67
COL9A3-204ENST00000463487 C1QAP02745 245 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 C9P02748 559 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 C8GP07360 202 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 THRAP10827 490 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 SPINK2P20155 84 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 CSTF2P33240 577 aaKnown RBP eCLIP19.22■□□□□ 0.67
COL9A3-204ENST00000463487 RAB28P51157 221 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 SP140Q13342 867 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 SNAP47Q5SQN1 464 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 B3GNT8Q7Z7M8 397 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 CARFQ8N187 725 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 WDR36Q8NI36 951 aaKnown RBP19.22■□□□□ 0.67
COL9A3-204ENST00000463487 LINGO1Q96FE5 620 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 OLFM1Q99784 485 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 CCDC77Q9BR77 488 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 MCMBPQ9BTE3 642 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 NRSN2Q9GZP1 204 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 SEMA6CQ9H3T2 930 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 GPAMQ9HCL2 828 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 NFS1Q9Y697 457 aa19.22■□□□□ 0.67
COL9A3-204ENST00000463487 PIPSLA2A3N6 862 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 GSAPA4D1B5 854 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 MAP3K7O43318 606 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 RIPK2O43353 540 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 FAM153BP0C7A2 387 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 HOXB3P14651 431 aaPredicted RBP19.21■□□□□ 0.67
COL9A3-204ENST00000463487 ZNF37AP17032 561 aaPredicted RBP19.21■□□□□ 0.67
COL9A3-204ENST00000463487 CYP2A7P20853 494 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 HSD17B2P37059 387 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 SERPINB9P50453 376 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 PDX1P52945 283 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 TAS2R39P59534 338 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 EFTUD2Q15029 972 aaKnown RBP eCLIP19.21■□□□□ 0.672e-7■■■■□ 21.8
COL9A3-204ENST00000463487 FAM153CQ494X1 144 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 WDR93Q6P2C0 686 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 TMPRSS9Q7Z410 1059 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 CCDC91Q7Z6B0 441 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 GSPT2Q8IYD1 628 aaKnown RBP19.21■□□□□ 0.67
COL9A3-204ENST00000463487 FBXO15Q8NCQ5 510 aaPredicted RBP19.21■□□□□ 0.67
COL9A3-204ENST00000463487 AGBL5Q8NDL9 886 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 MCOLN3Q8TDD5 553 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 EEF1AKMT1Q8WVE0 214 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 ASB11Q8WXH4 323 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 SLC22A18Q96BI1 424 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 MRRFQ96E11 262 aaKnown RBP19.21■□□□□ 0.67
COL9A3-204ENST00000463487 TRIM54Q9BYV2 358 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 SPATA7Q9P0W8 599 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 PDP2Q9P2J9 529 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 KLHL3Q9UH77 587 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 ICKQ9UPZ9 632 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 RUVBL2Q9Y230 463 aaKnown RBP19.21■□□□□ 0.67
COL9A3-204ENST00000463487 MTO1Q9Y2Z2 717 aaKnown RBP19.21■□□□□ 0.67
COL9A3-204ENST00000463487 KNTC1P50748 2209 aa19.21■□□□□ 0.67
COL9A3-204ENST00000463487 EXOC1LA0A1B0GW35 172 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 TLCD2A6NGC4 264 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 RASGRF2O14827 1237 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 CASC3O15234 703 aaKnown RBP19.2■□□□□ 0.66
COL9A3-204ENST00000463487 SLC16A5O15375 505 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 ITGA2BP08514 1039 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 ANKRD34CP0C6C1 535 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 JMJD7P0C870 316 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 POLR2CP19387 275 aaPredicted RBP19.2■□□□□ 0.66
COL9A3-204ENST00000463487 CNTFP26441 200 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 PKLRP30613 574 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 MSH2P43246 934 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 BDKRB1P46663 353 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 TIAL1Q01085 375 aaKnown RBP eCLIP19.2■□□□□ 0.66
COL9A3-204ENST00000463487 CFHR1Q03591 330 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 LGSNQ5TDP6 509 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 CYB5D1Q6P9G0 228 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 ZNF574Q6ZN55 896 aaPredicted RBP19.2■□□□□ 0.66
COL9A3-204ENST00000463487 UBE2R2Q712K3 238 aaPredicted RBP19.2■□□□□ 0.66
COL9A3-204ENST00000463487 RAB11FIP2Q7L804 512 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 PIWIL4Q7Z3Z4 852 aaKnown RBP19.2■□□□□ 0.66
COL9A3-204ENST00000463487 PRSS42Q7Z5A4 293 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 LSMEM2Q8N112 164 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 SLC44A1Q8WWI5 657 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 XKR8Q9H6D3 395 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 POLR1BQ9H9Y6 1135 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 TMEM9Q9P0T7 183 aa19.2■□□□□ 0.66
COL9A3-204ENST00000463487 BTN3A1O00481 513 aa19.19■□□□□ 0.66
COL9A3-204ENST00000463487 PLD2O14939 933 aa19.19■□□□□ 0.66
COL9A3-204ENST00000463487 KRT38O76015 456 aa19.19■□□□□ 0.66
COL9A3-204ENST00000463487 HIST1H2AGP0C0S8 130 aaPredicted RBP19.19■□□□□ 0.66
COL9A3-204ENST00000463487 MYBL2P10244 700 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms