RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 TBC1D21Q8IYX1 336 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 GALNT16Q8N428 558 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 CISD2Q8N5K1 135 aaKnown RBP12.85□□□□□ -0.35
HMGB3-204ENST00000448905 CLDN19Q8N6F1 224 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 C19orf47Q8N9M1 422 aaKnown RBP12.85□□□□□ -0.35
HMGB3-204ENST00000448905 Q8NA96 180 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 SNRNP40Q96DI7 357 aaKnown RBP12.85□□□□□ -0.35
HMGB3-204ENST00000448905 VPS50Q96JG6 964 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 SPATA13Q96N96 652 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 HGH1Q9BTY7 390 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 OSBPL8Q9BZF1 889 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 GOLPH3Q9H4A6 298 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 AGPAT4Q9NRZ5 378 aa12.85□□□□□ -0.35
HMGB3-204ENST00000448905 NLE1Q9NVX2 485 aaPredicted RBP12.85□□□□□ -0.35
HMGB3-204ENST00000448905 NBASA2RRP1 2371 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 A1L4Q6 167 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 ENO4A6NNW6 628 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 H7C0S8 307 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 CBX6O95503 412 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 OR56A5P0C7T3 313 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 CBSLP0DN79 551 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 ALAS2P22557 587 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 CBSP35520 551 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 CYLC1P35663 651 aaPredicted RBP12.84□□□□□ -0.35
HMGB3-204ENST00000448905 GLRBP48167 497 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 MSLNQ13421 630 aaPredicted RBP12.84□□□□□ -0.35
HMGB3-204ENST00000448905 CYP2A13Q16696 494 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 SYTL3Q4VX76 610 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 C1orf189Q5VU69 101 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 IRAK1BP1Q5VVH5 260 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 DENND5AQ6IQ26 1287 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 ARHGEF18Q6ZSZ5 1173 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 MRGPREQ86SM8 312 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 TTC13Q8NBP0 860 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 OR2Y1Q8NGV0 311 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 CCDC110Q8TBZ0 833 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 STYXQ8WUJ0 223 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 ELMO1Q92556 727 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 KRT35Q92764 455 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 SLC22A18Q96BI1 424 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 C19orf60Q96EN9 201 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 CDKN2AIPNLQ96HQ2 116 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 DNAJC1Q96KC8 554 aaKnown RBP12.84□□□□□ -0.35
HMGB3-204ENST00000448905 C5orf34Q96MH7 638 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 SPRTNQ9H040 489 aaPredicted RBP12.84□□□□□ -0.35
HMGB3-204ENST00000448905 P4HTMQ9NXG6 502 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 PLCL2Q9UPR0 1127 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 SLC5A6Q9Y289 635 aa12.84□□□□□ -0.35
HMGB3-204ENST00000448905 TDRKHQ9Y2W6 561 aaKnown RBP12.84□□□□□ -0.35
HMGB3-204ENST00000448905 TRBV5-4A0A0C4DH59 114 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 CCDC78A2IDD5 438 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 ANKUB1A6NFN9 424 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 ISM1B1AKI9 464 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 ZSCAN9O15535 394 aaPredicted RBP12.83□□□□□ -0.36
HMGB3-204ENST00000448905 KRT86O43790 486 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 AP2A1O95782 977 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 CHRM5P08912 532 aaPredicted RBP12.83□□□□□ -0.36
HMGB3-204ENST00000448905 UGT2B7P16662 529 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 TPH1P17752 444 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 CTNNA1P35221 906 aaKnown RBP12.83□□□□□ -0.36
HMGB3-204ENST00000448905 PTPN7P35236 360 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 PPARGP37231 505 aaPredicted RBP12.83□□□□□ -0.36
HMGB3-204ENST00000448905 CDKN1CP49918 316 aaPredicted RBP12.83□□□□□ -0.36
HMGB3-204ENST00000448905 ARSFP54793 590 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 SOX8P57073 446 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 OLIG2Q13516 323 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 SPARCL1Q14515 664 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 KIR2DS3Q14952 304 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 NR6A1Q15406 480 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 NKAIN1Q4KMZ8 207 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 PRR30Q53SZ7 412 aaPredicted RBP12.83□□□□□ -0.36
HMGB3-204ENST00000448905 OR5AR1Q8NGP9 310 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 DLG3Q92796 817 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 OR2A14Q96R47 310 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 GORASP1Q9BQQ3 440 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 TSSK1BQ9BXA7 367 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 LRRC40Q9H9A6 602 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 FAM60AQ9NP50 221 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 ASF1BQ9NVP2 202 aa12.83□□□□□ -0.36
HMGB3-204ENST00000448905 ZNF106Q9H2Y7 1883 aaKnown RBP12.82□□□□□ -0.36
HMGB3-204ENST00000448905 A0A0J9YY10 115 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 WIPF3A6NGB9 483 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 CCL22O00626 93 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 PJA2O43164 708 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 RPN2P04844 631 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 ATXN8OSP0DMR3 200 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 ITGAXP20702 1163 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 MARCKSL1P49006 195 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 AIMP2Q13155 320 aaKnown RBP12.82□□□□□ -0.36
HMGB3-204ENST00000448905 TBX2Q13207 712 aaPredicted RBP12.82□□□□□ -0.36
HMGB3-204ENST00000448905 ITIH4Q14624 930 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 POU6F1Q14863 301 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 BRD3Q15059 726 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 SLC5A12Q1EHB4 618 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 ZNF658BQ4V348 819 aaPredicted RBP12.82□□□□□ -0.36
HMGB3-204ENST00000448905 ZNF385CQ66K41 422 aaPredicted RBP12.82□□□□□ -0.36
HMGB3-204ENST00000448905 TTC23LQ6PF05 361 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 LINC00523Q86TU6 105 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 ZNF655Q8N720 491 aaPredicted RBP12.82□□□□□ -0.36
HMGB3-204ENST00000448905 OR5K2Q8NHB8 316 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms