RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 HLFQ16534 295 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 CAMK4Q16566 473 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 IMMTQ16891 758 aaKnown RBP4.06□□□□□ -1.76
VPS29-202ENST00000447578 ZNF674Q2M3X9 581 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 HSP90AB3PQ58FF7 597 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 C6orf10Q5SRN2 563 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 ASPHD1Q5U4P2 390 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 KRT39Q6A163 491 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 TMEM211Q6ICI0 200 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 ANKRD54Q6NXT1 300 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 INTS8Q75QN2 995 aaKnown RBP4.06□□□□□ -1.76
VPS29-202ENST00000447578 MTSS1LQ765P7 747 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 CACNA2D4Q7Z3S7 1137 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 CCDC190Q86UF4 302 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 MFN1Q8IWA4 741 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 SFTPA2Q8IWL1 248 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 FBXO39Q8N4B4 442 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 OR10S1Q8NGN2 331 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 HM13Q8TCT9 377 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 BICD2Q8TD16 824 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 SLC35F5Q8WV83 523 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 DNASE2BQ8WZ79 361 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 INPP5DQ92835 1189 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 ERGIC1Q969X5 290 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 SPACA9Q96E40 222 aaPredicted RBP4.06□□□□□ -1.76
VPS29-202ENST00000447578 ARSGQ96EG1 525 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 CDHR1Q96JP9 859 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 ZNF558Q96NG5 402 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 GFM1Q96RP9 751 aaKnown RBP4.06□□□□□ -1.76
VPS29-202ENST00000447578 DDOQ99489 341 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 LLPHQ9BRT6 129 aaKnown RBP4.06□□□□□ -1.76
VPS29-202ENST00000447578 WDR83Q9BRX9 315 aaKnown RBP4.06□□□□□ -1.76
VPS29-202ENST00000447578 SYT17Q9BSW7 474 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 FUCA2Q9BTY2 467 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 TNMDQ9H2S6 317 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 NOL11Q9H8H0 719 aaKnown RBP4.06□□□□□ -1.76
VPS29-202ENST00000447578 CNOT10Q9H9A5 744 aaKnown RBP4.06□□□□□ -1.76
VPS29-202ENST00000447578 ACSS1Q9NUB1 689 aaPredicted RBP4.06□□□□□ -1.76
VPS29-202ENST00000447578 TAS2R14Q9NYV8 317 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.06□□□□□ -1.76
VPS29-202ENST00000447578 IL17BQ9UHF5 180 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 CTNNA3Q9UI47 895 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 KLHL20Q9Y2M5 609 aa4.06□□□□□ -1.76
VPS29-202ENST00000447578 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.06□□□□□ -1.76
VPS29-202ENST00000447578 ELP1O95163 1332 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 CDHR2Q9BYE9 1310 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 A0A0B4J293 547 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 M0QZ24 198 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 ACOT8O14734 319 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 GAS8-AS1O95177 125 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 CELF2O95319 508 aaKnown RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 PAPSS2O95340 614 aaPredicted RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 CTDNEP1O95476 244 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 ADCY5O95622 1261 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 TPM2P07951 284 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 ZFYP08048 801 aaPredicted RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 CYC1P08574 325 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 ACAA1P09110 424 aaPredicted RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 OR52Z1P0C646 297 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 CCDC192P0DO97 292 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 PCGF2P35227 344 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 PRKCIP41743 596 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 PPP3CCP48454 512 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 HAND2P61296 217 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 HMGN5P82970 282 aaKnown RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 RBPJQ06330 500 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 PPIGQ13427 754 aaKnown RBP eCLIP4.05□□□□□ -1.76
VPS29-202ENST00000447578 PTK6Q13882 451 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 KEAP1Q14145 624 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 FAM98BQ52LJ0 330 aaKnown RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 NHSL2Q5HYW2 709 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 PLBD1Q6P4A8 553 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 MSANTD1Q6ZTZ1 278 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 CENPVQ7Z7K6 275 aaPredicted RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 ADIPOR2Q86V24 386 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 CEP57Q86XR8 500 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 PALB2Q86YC2 1186 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 TEX45Q8NA69 505 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 SLC4A11Q8NBS3 891 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 MOSPD2Q8NHP6 518 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 GRK7Q8WTQ7 553 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 NXNL1Q96CM4 212 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 DACH2Q96NX9 599 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 EGFL8Q99944 293 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 MSTO1Q9BUK6 570 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 SF3B5Q9BWJ5 86 aaKnown RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 FUT8Q9BYC5 575 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 TMEM39BQ9GZU3 492 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 PPIL3Q9H2H8 161 aaKnown RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 ZSCAN16Q9H4T2 348 aaPredicted RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 PPP1R3EQ9H7J1 279 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 TRPV4Q9HBA0 871 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 DDX19AQ9NUU7 478 aaKnown RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 CHCHD3Q9NX63 227 aaKnown RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 TRMT112Q9UI30 125 aaKnown RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 ACAD8Q9UKU7 415 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 CFAP45Q9UL16 551 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 TTC7AQ9ULT0 858 aaPredicted RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 KIF3AQ9Y496 699 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 LIPGQ9Y5X9 500 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms