RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 DUX1O43812 170 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 WBP4O75554 376 aaKnown RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 BCAS2O75934 225 aaPredicted RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 TIMP1P01033 207 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 IGHEP01854 428 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 OC90Q02509 493 aaPredicted RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 DECR1Q16698 335 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 LINGO4Q6UY18 593 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 SERINC5Q86VE9 423 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 AMIGO1Q86WK6 493 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 MMAAQ8IVH4 418 aaKnown RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 TMEM156Q8N614 296 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 PIH1D2Q8WWB5 315 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 RNF19AQ9NV58 838 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 SPATA6Q9NWH7 488 aaPredicted RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 PCDHGC4Q9Y5F7 938 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 YJEFN3A6XGL0 299 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 SNPHO15079 494 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 SLC16A5O15375 505 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 MLLT6P55198 1093 aaPredicted RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 KLHL17Q6TDP4 642 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 GPN1Q9HCN4 374 aaPredicted RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 ZNF304Q9HCX3 659 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 Q9N2J8 555 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 BTRCQ9Y297 605 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 ASNA1O43681 348 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 SNX4O95219 450 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 ATP6V1G2O95670 118 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 PRKAR1AP10644 381 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 GSTM3P21266 225 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 DCKP27707 260 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 IL12AP29459 219 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 HNRNPKP61978 463 aaKnown RBP eCLIP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 ABATP80404 500 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 SEMA3AQ14563 771 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 NAA30Q147X3 362 aaPredicted RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 ZNF805Q5CZA5 627 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 ZZZ3Q8IYH5 903 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 HORMAD2Q8N7B1 307 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 PNLDC1Q8NA58 520 aaKnown RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 GLIS3Q8NEA6 775 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 OR56A1Q8NGH5 318 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 CITO14578 2027 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 ENPP3O14638 875 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 SCAMP3O14828 347 aaKnown RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 HMGN1P05114 100 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 IQCF3P0C7M6 154 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 GBE1Q04446 702 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 ELAVL3Q14576 367 aaKnown RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 SMU1Q2TAY7 513 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 C22orf39Q6P5X5 142 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 SLC39A5Q6ZMH5 540 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 GRASPQ7Z6J2 395 aaPredicted RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 TMEM234Q8WY98 164 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 EXOSC8Q96B26 276 aaKnown RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 GAL3ST4Q96RP7 486 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 MINDY3Q9H8M7 445 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 DCLK1O15075 740 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 FFAR2O15552 330 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 AP5Z1O43299 807 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 SLC11A1P49279 550 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 MS4A13Q5J8X5 152 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 CRELD2Q6UXH1 353 aaPredicted RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 SYVN1Q86TM6 617 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 ZDHHC14Q8IZN3 488 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 NPLOC4Q8TAT6 608 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 OR2AG1Q9H205 316 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 LDAHQ9H6V9 325 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 EQTNQ9NQ60 294 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 XPNPEP1Q9NQW7 623 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 ZNF208O43345 1280 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 PSMG1O95456 288 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 RBMS1P29558 406 aaKnown RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 ERFP50548 548 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 GBX1Q14549 363 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 SPESP1Q6UW49 350 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 QSOX2Q6ZRP7 698 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 PGAM4Q8N0Y7 254 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 CMASQ8NFW8 434 aaPredicted RBP8.39□□□□□ -1.07
PTPN3-204ENST00000446349 OR4K17Q8NGC6 315 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 FBXW2Q9UKT8 454 aa8.39□□□□□ -1.07
PTPN3-204ENST00000446349 CPED1A4D0V7 1026 aa8.38□□□□□ -1.07
PTPN3-204ENST00000446349 MTMR11A4FU01 709 aa8.38□□□□□ -1.07
PTPN3-204ENST00000446349 NPPAP01160 153 aa8.38□□□□□ -1.07
PTPN3-204ENST00000446349 HSPA7P48741 367 aa8.38□□□□□ -1.07
PTPN3-204ENST00000446349 DUS1LQ6P1R4 473 aaKnown RBP8.38□□□□□ -1.07
PTPN3-204ENST00000446349 SPATA2Q9UM82 520 aa8.38□□□□□ -1.07
PTPN3-204ENST00000446349 ANKRD65E5RJM6 399 aa8.38□□□□□ -1.07
PTPN3-204ENST00000446349 PDE5AO76074 875 aa8.38□□□□□ -1.07
PTPN3-204ENST00000446349 IFI44LQ53G44 452 aa8.38□□□□□ -1.07
PTPN3-204ENST00000446349 FAM129CQ86XR2 697 aa8.38□□□□□ -1.07
PTPN3-204ENST00000446349 ANKFN1Q8N957 763 aa8.38□□□□□ -1.07
PTPN3-204ENST00000446349 SIDT2Q8NBJ9 832 aaKnown RBP8.38□□□□□ -1.07
PTPN3-204ENST00000446349 GDE1Q9NZC3 331 aa8.38□□□□□ -1.07
PTPN3-204ENST00000446349 SH3PXD2BA1X283 911 aa8.38□□□□□ -1.07
PTPN3-204ENST00000446349 LRATO95237 230 aa8.38□□□□□ -1.07
PTPN3-204ENST00000446349 CYP4F2P78329 520 aa8.38□□□□□ -1.07
PTPN3-204ENST00000446349 ENPP2Q13822 863 aa8.38□□□□□ -1.07
PTPN3-204ENST00000446349 PAFAH1B3Q15102 231 aaKnown RBP8.38□□□□□ -1.07
PTPN3-204ENST00000446349 POU5F2Q8N7G0 328 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms