RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ATP8B1O43520 1251 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 NUDT21O43809 227 aaKnown RBP15.36■□□□□ 0.05
USP40-206ENST00000443711 SASH3O75995 380 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 ENO2P09104 434 aaPredicted RBP15.36■□□□□ 0.05
USP40-206ENST00000443711 HIST1H2AGP0C0S8 130 aaPredicted RBP15.36■□□□□ 0.05
USP40-206ENST00000443711 GLB1P16278 677 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 TFEBP19484 476 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 HIST1H2ADP20671 130 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 BDKRB1P46663 353 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 CCT5P48643 541 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 DAB2P98082 770 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 PRKG2Q13237 762 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 TSNQ15631 228 aaKnown RBP15.36■□□□□ 0.05
USP40-206ENST00000443711 ISCA2Q86U28 154 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 KIAA2013Q8IYS2 634 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 C4orf33Q8N1A6 199 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 PLD6Q8N2A8 252 aaKnown RBP15.36■□□□□ 0.05
USP40-206ENST00000443711 STAG3L4Q8TBR4 150 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 RAD51AP1Q96B01 352 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 ALKBH8Q96BT7 664 aaKnown RBP15.36■□□□□ 0.05
USP40-206ENST00000443711 SCYL1Q96KG9 808 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 HIST1H2AHQ96KK5 128 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 CNDP2Q96KP4 475 aaKnown RBP15.36■□□□□ 0.05
USP40-206ENST00000443711 GPR78Q96P69 363 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 SMC6Q96SB8 1091 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 HIST1H2AJQ99878 128 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 H2AFJQ9BTM1 129 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 HGH1Q9BTY7 390 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 KIR3DX1Q9H7L2 352 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 UCK1Q9HA47 277 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 LRIT1Q9P2V4 623 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 FTSJ1Q9UET6 329 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 ADAMTS6Q9UKP5 1117 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 IKZF3Q9UKT9 509 aa15.36■□□□□ 0.05
USP40-206ENST00000443711 TDRKHQ9Y2W6 561 aaKnown RBP15.36■□□□□ 0.05
USP40-206ENST00000443711 PTPRZ1P23471 2315 aaPredicted RBP15.35■□□□□ 0.05
USP40-206ENST00000443711 FRYLO94915 3013 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 LAMA1P25391 3075 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 LY6G6EA0A0G2JKS1 128 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 PRAMEF33A0A0G2JMD5 474 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 CPED1A4D0V7 1026 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 PPM1DO15297 605 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 GLRA3O75311 464 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 RBP1P09455 135 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 CKMT1AP12532 417 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 CKMT2P17540 419 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 GPR18Q14330 331 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 AGBL2Q5U5Z8 902 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 SBSNQ6UWP8 590 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 TMEM26Q6ZUK4 368 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 FRA10AC1Q70Z53 315 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 EXOC3L1Q86VI1 746 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 BANPQ8N9N5 519 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 OR9A1PQ8NGU1 263 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 RHEBL1Q8TAI7 183 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 DLG3Q92796 817 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 NAT6Q93015 286 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 PTERQ96BW5 349 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 CDC6Q99741 560 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 ALG9Q9H6U8 611 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 RDH14Q9HBH5 336 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 ZNF358Q9NW07 568 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 MKS1Q9NXB0 559 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 GRID1Q9ULK0 1009 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 RNF112Q9ULX5 631 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 PDE10AQ9Y233 779 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 ACTL7BQ9Y614 415 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 RNF215Q9Y6U7 377 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 U3KQA8 63 aa15.35■□□□□ 0.05
USP40-206ENST00000443711 GVINP1Q7Z2Y8 2422 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 EME2A4GXA9 379 aaPredicted RBP15.34■□□□□ 0.05
USP40-206ENST00000443711 ZW10O43264 779 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 SYF2O95926 243 aaKnown RBP15.34■□□□□ 0.05
USP40-206ENST00000443711 MYF5P13349 255 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 PNLIPP16233 465 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 CRHR1P34998 444 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 GPR3P46089 330 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 GLRBP48167 497 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 AP1S2P56377 157 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 OR4D1Q15615 310 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 PHKG1Q16816 387 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 EEF1AKMT2Q5JPI9 291 aaKnown RBP15.34■□□□□ 0.05
USP40-206ENST00000443711 ZNF438Q7Z4V0 828 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 PIP4P1Q86T03 277 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 GPSM1Q86YR5 675 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 RAB42Q8N4Z0 105 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 NETO1Q8TDF5 533 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 LCN9Q8WX39 176 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 APOPT1Q96IL0 206 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 CCDC138Q96M89 665 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 SLC38A3Q99624 504 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 SH3GL2Q99962 352 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 MRPL57Q9BQC6 102 aaKnown RBP15.34■□□□□ 0.05
USP40-206ENST00000443711 LNPEPQ9UIQ6 1025 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 OARD1Q9Y530 152 aa15.34■□□□□ 0.05
USP40-206ENST00000443711 LILRA5A6NI73 299 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 PCNX2A6NKB5 2137 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 SYCE1LA8MT33 242 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 MYO1CO00159 1063 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 KERAO60938 352 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms