RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 ACTL9Q8TC94 416 aa7.54□□□□□ -1.2
VPS50-204ENST00000438395 CPT1CQ8TCG5 803 aa7.54□□□□□ -1.2
VPS50-204ENST00000438395 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.54□□□□□ -1.2
VPS50-204ENST00000438395 CALR3Q96L12 384 aaKnown RBP7.54□□□□□ -1.2
VPS50-204ENST00000438395 SPATA13Q96N96 652 aa7.54□□□□□ -1.2
VPS50-204ENST00000438395 LRFN5Q96NI6 719 aa7.54□□□□□ -1.2
VPS50-204ENST00000438395 TBL1YQ9BQ87 522 aa7.54□□□□□ -1.2
VPS50-204ENST00000438395 DPH2Q9BQC3 489 aaPredicted RBP7.54□□□□□ -1.2
VPS50-204ENST00000438395 HGH1Q9BTY7 390 aa7.54□□□□□ -1.2
VPS50-204ENST00000438395 TRIM55Q9BYV6 548 aa7.54□□□□□ -1.2
VPS50-204ENST00000438395 TRIM5Q9C035 493 aa7.54□□□□□ -1.2
VPS50-204ENST00000438395 MVB12BQ9H7P6 319 aa7.54□□□□□ -1.2
VPS50-204ENST00000438395 SLAMF7Q9NQ25 335 aa7.54□□□□□ -1.2
VPS50-204ENST00000438395 GPN3Q9UHW5 284 aaPredicted RBP7.54□□□□□ -1.2
VPS50-204ENST00000438395 FEZ2Q9UHY8 353 aaPredicted RBP7.54□□□□□ -1.2
VPS50-204ENST00000438395 BTRCQ9Y297 605 aa7.54□□□□□ -1.2
VPS50-204ENST00000438395 PCDHGA9Q9Y5G4 932 aaKnown RBP7.54□□□□□ -1.2
VPS50-204ENST00000438395 CENPEQ02224 2701 aa7.54□□□□□ -1.2
VPS50-204ENST00000438395 SERTM1A2A2V5 107 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 BLACEA4D250 179 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 E7EQ34 232 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 K7EM74 188 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 QSOX1O00391 747 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 PEX12O00623 359 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 GAPDHSO14556 408 aaPredicted RBP7.53□□□□□ -1.2
VPS50-204ENST00000438395 DDX3YO15523 660 aaKnown RBP7.53□□□□□ -1.2
VPS50-204ENST00000438395 KLHL41O60662 606 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 TMEM63AO94886 807 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 IGHEP01854 428 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 GSTM1P09488 218 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 RAB40ALP0C0E4 278 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 FAM157BP0CG42 384 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 ARAFP10398 606 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 ATP1B2P14415 290 aaPredicted RBP7.53□□□□□ -1.2
VPS50-204ENST00000438395 MC4RP32245 332 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 LMAN1P49257 510 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 VAV2P52735 878 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 ZNF140P52738 457 aaPredicted RBP7.53□□□□□ -1.2
VPS50-204ENST00000438395 RWDD2BP57060 319 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 OTUD4Q01804 1114 aaKnown RBP7.53□□□□□ -1.2
VPS50-204ENST00000438395 GSTM4Q03013 218 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 RPA4Q13156 261 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 NCF4Q15080 339 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 P3H1Q32P28 736 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 PTCHD3Q3KNS1 767 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 ANKRD20A2Q5SQ80 823 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 ANKRD20A1Q5TYW2 823 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 ANKRD20A3Q5VUR7 823 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 IZUMO3Q5VZ72 239 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 FBXO38Q6PIJ6 1188 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 SNX20Q7Z614 316 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 AMIGO1Q86WK6 493 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 HPS6Q86YV9 775 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 CCDC170Q8IYT3 715 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 TMEM102Q8N9M5 508 aaPredicted RBP7.53□□□□□ -1.2
VPS50-204ENST00000438395 CLEC1AQ8NC01 280 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 OR13C4Q8NGS5 318 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 NAT14Q8WUY8 206 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 KRT35Q92764 455 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 ZNF501Q96CX3 271 aaPredicted RBP7.53□□□□□ -1.2
VPS50-204ENST00000438395 SGSM3Q96HU1 749 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 HSH2DQ96JZ2 352 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 LINC00615Q96LM1 132 aaPredicted RBP7.53□□□□□ -1.2
VPS50-204ENST00000438395 IP6K3Q96PC2 410 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 RUFY1Q96T51 708 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 TTC1Q99614 292 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 NLNQ9BYT8 704 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 OSBPL8Q9BZF1 889 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 FAM96AQ9H5X1 160 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 C10orf88Q9H8K7 445 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 COG4Q9H9E3 785 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 GPR83Q9NYM4 423 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 TCFL5Q9UL49 500 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 PCDHGB7Q9Y5F8 929 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 PCDHA13Q9Y5I0 950 aa7.53□□□□□ -1.2
VPS50-204ENST00000438395 C17orf113A0A1B0GUU1 675 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 CCDC78A2IDD5 438 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 A6NL46 340 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 CYSRT1A8MQ03 144 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 BTN3A1O00481 513 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 CCL22O00626 93 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 ZNF185O15231 689 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 OR2B3O76000 313 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 FTH1P02794 183 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 PDGFAP04085 211 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 CD63P08962 238 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 GNLYP22749 145 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 ACRV1P26436 265 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 PRDX3P30048 256 aaKnown RBP7.52□□□□□ -1.21
VPS50-204ENST00000438395 OTX2P32243 289 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 SHMT2P34897 504 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 CTNNA1P35221 906 aaKnown RBP7.52□□□□□ -1.21
VPS50-204ENST00000438395 PTPN7P35236 360 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 ADRA1AP35348 466 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 CD151P48509 253 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 CD97P48960 835 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 CACNG1Q06432 222 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 ABRQ12979 859 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 PRKG2Q13237 762 aa7.52□□□□□ -1.21
VPS50-204ENST00000438395 ATP1A4Q13733 1029 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms