RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CSTF2P33240 577 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS53-204ENST00000437048 DLSTP36957 453 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 RAB8AP61006 207 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 BMPR2Q13873 1038 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 TSTD2Q5T7W7 516 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 RAB12Q6IQ22 244 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 NCEH1Q6PIU2 408 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 UNC5AQ6ZN44 842 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 PHC2Q8IXK0 858 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 OR6J1Q8NGC5 347 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 TWNKQ96RR1 684 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 CYP2S1Q96SQ9 504 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 EPYCQ99645 322 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 OR12D3Q9UGF7 316 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 MAGEB17A8MXT2 336 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 ITM2AO43736 263 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 PEX2P28328 305 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 RYKP34925 604 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 RPS5P46782 204 aaKnown RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 ERFEQ4G0M1 354 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 TEX44Q53QW1 395 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 TMEM209Q96SK2 561 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 COPS8Q99627 209 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 TFB2MQ9H5Q4 396 aaKnown RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 TUBAL3A6NHL2 446 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 HSBP1L1C9JCN9 74 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 MT-CO2P00403 227 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 M6PRP20645 277 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 HCAR3P49019 387 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 GALK2Q01415 458 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 CAMK2DQ13557 499 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 PWP1Q13610 501 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 UBXN11Q5T124 520 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 CREB3L2Q70SY1 520 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 MMAAQ8IVH4 418 aaKnown RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 SKA3Q8IX90 412 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 TESCQ96BS2 214 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 ZNF599Q96NL3 588 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 SYT15Q9BQS2 421 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 FUNDC2Q9BWH2 189 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 POLR2J2Q9GZM3 115 aaKnown RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 TREHO43280 583 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 XYLBO75191 536 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 BMP6P22004 513 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 GSTM2P28161 218 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 ZACNQ401N2 412 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 MPP7Q5T2T1 576 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 KCTD13Q8WZ19 329 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 RNF6Q9Y252 685 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 SPIN1Q9Y657 262 aaPredicted RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 EIF3FO00303 357 aaPredicted RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 CNTN5O94779 1100 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 HERVK_113P63132 956 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 ELOAQ14241 798 aaKnown RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 PLA2G4EQ3MJ16 856 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 TMEM31Q5JXX7 168 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 PCDH20Q8N6Y1 951 aaKnown RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 OR5B12Q96R08 314 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 ERVK-6Q9BXR3 956 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 FTHL17Q9BXU8 183 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 ZNF408Q9H9D4 720 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 TNFSF13BQ9Y275 285 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 CYB561D2O14569 222 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 ATMINO43313 823 aaPredicted RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 ATG13O75143 517 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 RFPL2O75678 378 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 TOB1P50616 345 aaPredicted RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 PTPN5P54829 565 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 AQP4P55087 323 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 MANFP55145 182 aaKnown RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 UNQ6126/PRO20091Q6UXV3 157 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 DNAJC14Q6Y2X3 702 aaPredicted RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 C3orf67Q6ZVT6 689 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 AHSA2Q719I0 299 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 LRRC70Q7Z2Q7 622 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 AMIGO2Q86SJ2 522 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 PAQR7Q86WK9 346 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 C10orf82Q8WW14 230 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 PELOQ9BRX2 385 aaKnown RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 SENP2Q9HC62 589 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 TNFRSF10DQ9UBN6 386 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 WASF3Q9UPY6 502 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 MYH14Q7Z406 1995 aaKnown RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 TBX10O75333 385 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 HTR1BP28222 390 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 TSPAN5P62079 268 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 METTL11BQ5VVY1 283 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 PNCKQ6P2M8 343 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 KLHDC8BQ8IXV7 354 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 DUSP9Q99956 384 aaKnown RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 BCL2L14Q9BZR8 327 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 NLGN3Q9NZ94 848 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 ADAMTS3O15072 1205 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 HSD3B1P14060 373 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 HSD3B2P26439 372 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 ACVR2AP27037 513 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 PBX3P40426 434 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 KHDC1Q4VXA5 237 aaKnown RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 SH3PXD2AQ5TCZ1 1133 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 ZNF34Q8IZ26 560 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms