RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ANGPTL3Q9Y5C1 460 aa9.85□□□□□ -0.83
CD44-207ENST00000425428 GOLGA4Q13439 2230 aaKnown RBP9.84□□□□□ -0.83
CD44-207ENST00000425428 TRBV23OR9-2A0A075B6M9 112 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 TMEM120BA0PK00 339 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 FLRT2O43155 660 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 MAP3K7O43318 606 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 H2AFYO75367 372 aaKnown RBP9.84□□□□□ -0.83
CD44-207ENST00000425428 C1orf105O95561 183 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 GUCA1CO95843 209 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 NR1D1P20393 614 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 SHMT2P34897 504 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 SLC18A1P54219 525 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 PRKAA2P54646 552 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 CDKL1Q00532 357 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 TIAL1Q01085 375 aaKnown RBP eCLIP9.84□□□□□ -0.83
CD44-207ENST00000425428 BNIP3Q12983 259 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 NR0B2Q15466 257 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 C14orf28Q4W4Y0 310 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 TNFAIP8L3Q5GJ75 292 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 THEMIS2Q5TEJ8 643 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 SULT1C3Q6IMI6 304 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 TMEM207Q6UWW9 146 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 CLEC14AQ86T13 490 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 ISCA2Q86U28 154 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 NRROSQ86YC3 692 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 VRK3Q8IV63 474 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 SYTL1Q8IYJ3 562 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 CENPLQ8N0S6 344 aaPredicted RBP9.84□□□□□ -0.83
CD44-207ENST00000425428 LILRA3Q8N6C8 439 aaPredicted RBP9.84□□□□□ -0.83
CD44-207ENST00000425428 FBXO15Q8NCQ5 510 aaPredicted RBP9.84□□□□□ -0.83
CD44-207ENST00000425428 OR9A1PQ8NGU1 263 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 FAM76AQ8TAV0 307 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 LCN9Q8WX39 176 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 RMDN2Q96LZ7 410 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 FAM111AQ96PZ2 611 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 INSM2Q96T92 566 aaPredicted RBP9.84□□□□□ -0.83
CD44-207ENST00000425428 UNKQ9C0B0 810 aaKnown RBP9.84□□□□□ -0.83
CD44-207ENST00000425428 PRM3Q9NNZ6 103 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 IGSF5Q9NSI5 407 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 UTP6Q9NYH9 597 aaKnown RBP9.84□□□□□ -0.83
CD44-207ENST00000425428 SPATA7Q9P0W8 599 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 XPR1Q9UBH6 696 aa9.84□□□□□ -0.83
CD44-207ENST00000425428 PCYT1BQ9Y5K3 369 aaPredicted RBP9.84□□□□□ -0.83
CD44-207ENST00000425428 CFAP20Q9Y6A4 193 aaKnown RBP9.84□□□□□ -0.83
CD44-207ENST00000425428 NCF1BA6NI72 391 aaPredicted RBP9.83□□□□□ -0.84
CD44-207ENST00000425428 OR52A4PA6NMU1 304 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 NCF1CA8MVU1 366 aaPredicted RBP9.83□□□□□ -0.84
CD44-207ENST00000425428 GFYI3L273 518 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 CDC7O00311 574 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 IPO13O94829 963 aaKnown RBP9.83□□□□□ -0.84
CD44-207ENST00000425428 NCF1P14598 390 aaPredicted RBP9.83□□□□□ -0.84
CD44-207ENST00000425428 CPA3P15088 417 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 ATP5F1P24539 256 aaPredicted RBP9.83□□□□□ -0.84
CD44-207ENST00000425428 ACADLP28330 430 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 PIK3CGP48736 1102 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 PRKG2Q13237 762 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 TSTA3Q13630 321 aaPredicted RBP9.83□□□□□ -0.84
CD44-207ENST00000425428 ARHGAP19Q14CB8 494 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 CLCA4Q14CN2 919 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 TTMPQ5BVD1 217 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 TECRLQ5HYJ1 363 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 CYHR1Q6ZMK1 362 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 GATAD2AQ86YP4 633 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 HOMEZQ8IX15 550 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 SFRP1Q8N474 314 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 ARMC2Q8NEN0 867 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 SPDYE1Q8NFV5 336 aaPredicted RBP9.83□□□□□ -0.84
CD44-207ENST00000425428 OR4C6Q8NH72 309 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 SAP25Q8TEE9 199 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 NAT6Q93015 286 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 SLC22A18Q96BI1 424 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 HGH1Q9BTY7 390 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 PCBD2Q9H0N5 130 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 SRMSQ9H3Y6 488 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 SMOC1Q9H4F8 434 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 EPB41L1Q9H4G0 881 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 FSCN3Q9NQT6 498 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 DNAAF2Q9NVR5 837 aaKnown RBP9.83□□□□□ -0.84
CD44-207ENST00000425428 TMEM216Q9P0N5 145 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 PNMA8BQ9ULN7 279 aaPredicted RBP9.83□□□□□ -0.84
CD44-207ENST00000425428 LNP1A1A4G5 178 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 MATN2O00339 956 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 TSPAN12O95859 305 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 AMD1P17707 334 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 RPA3P35244 121 aaPredicted RBP9.83□□□□□ -0.84
CD44-207ENST00000425428 ARL1P40616 181 aaPredicted RBP9.83□□□□□ -0.84
CD44-207ENST00000425428 BDKRB1P46663 353 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 PGGT1BP53609 377 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 ALDH18A1P54886 795 aaKnown RBP9.83□□□□□ -0.84
CD44-207ENST00000425428 BNC1Q01954 994 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 TGFBIQ15582 683 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 ZNF658BQ4V348 819 aaPredicted RBP9.83□□□□□ -0.84
CD44-207ENST00000425428 ANKS6Q68DC2 871 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 PRR23CQ6ZRP0 262 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 NUDCD3Q8IVD9 361 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 PLD6Q8N2A8 252 aaKnown RBP9.83□□□□□ -0.84
CD44-207ENST00000425428 EID2Q8N6I1 236 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 OR5AR1Q8NGP9 310 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 MGARPQ8TDB4 240 aa9.83□□□□□ -0.84
CD44-207ENST00000425428 RHBDD1Q8TEB9 315 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms