RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 PTRHD1Q6GMV3 140 aaKnown RBP18.45■□□□□ 0.54
SF3A1-202ENST00000411423 FAM199XQ6PEV8 388 aaPredicted RBP18.45■□□□□ 0.54
SF3A1-202ENST00000411423 CENPUQ71F23 418 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 FAM20CQ8IXL6 584 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 CARFQ8N187 725 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 STARD8Q92502 1023 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 STAMBPL1Q96FJ0 436 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 IL17FQ96PD4 163 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 NAP1L3Q99457 506 aaPredicted RBP18.45■□□□□ 0.54
SF3A1-202ENST00000411423 TUBB2BQ9BVA1 445 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 FAM60AQ9NP50 221 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 RUVBL2Q9Y230 463 aaKnown RBP18.45■□□□□ 0.54
SF3A1-202ENST00000411423 NFS1Q9Y697 457 aa18.45■□□□□ 0.54
SF3A1-202ENST00000411423 ZNF891A8MT65 544 aaPredicted RBP18.44■□□□□ 0.54
SF3A1-202ENST00000411423 C2orf74A8MZ97 194 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 MATN2O00339 956 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 NIPSNAP2O75323 286 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 NDUFS3O75489 264 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 CTSBP07858 339 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 MLNP12872 115 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 PKLRP30613 574 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 FMO4P31512 558 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 PTGIRP43119 386 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 PLOD1Q02809 727 aaPredicted RBP18.44■□□□□ 0.54
SF3A1-202ENST00000411423 CCSMST1Q4G0I0 132 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 ANKRD20A4Q4UJ75 823 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 RNASEH2BQ5TBB1 312 aaKnown RBP18.44■□□□□ 0.54
SF3A1-202ENST00000411423 LCN10Q6JVE6 187 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 SPESP1Q6UW49 350 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 CDHR3Q6ZTQ4 885 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 OTUD6BQ8N6M0 293 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 LINC01555Q8NAE3 123 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 OR1L3Q8NH93 324 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 CFAP61Q8NHU2 1237 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 CT55Q8WUE5 264 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 ZNF669Q96BR6 464 aaPredicted RBP18.44■□□□□ 0.54
SF3A1-202ENST00000411423 FAM136AQ96C01 138 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 SIGLEC10Q96LC7 697 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 LHX9Q9NQ69 397 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 KCND1Q9NSA2 647 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 GNPTGQ9UJJ9 305 aa18.44■□□□□ 0.54
SF3A1-202ENST00000411423 PIPSLA2A3N6 862 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 BANF1O75531 89 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 SHMT2P34897 504 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 PPARGP37231 505 aaPredicted RBP18.43■□□□□ 0.54
SF3A1-202ENST00000411423 GABRA4P48169 554 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 C19orf57Q0VDD7 668 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 CDC20Q12834 499 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 GPS2Q13227 327 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 KYNUQ16719 465 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 DNAJC21Q5F1R6 531 aaKnown RBP18.43■□□□□ 0.54
SF3A1-202ENST00000411423 CASC4Q6P4E1 433 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 TMEM135Q86UB9 458 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 CREG2Q8IUH2 290 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 CILP2Q8IUL8 1156 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 C2orf73Q8N5S3 287 aaPredicted RBP18.43■□□□□ 0.54
SF3A1-202ENST00000411423 ASZ1Q8WWH4 475 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 KIAA1143Q96AT1 154 aaPredicted RBP18.43■□□□□ 0.54
SF3A1-202ENST00000411423 MED8Q96G25 268 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 CAPZA3Q96KX2 299 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 FCRL4Q96PJ5 515 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 POLG2Q9UHN1 485 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 CRYL1Q9Y2S2 319 aa18.43■□□□□ 0.54
SF3A1-202ENST00000411423 PIEZO2Q9H5I5 2752 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 FAM237BA0A1B0GVD1 139 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 SDR42E2A6NKP2 422 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 TMEM150CB9EJG8 249 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 H3BMH7 237 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 SCRG1O75711 98 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 APOA4P06727 396 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 IVDP26440 423 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 BDKRB1P46663 353 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 SARNPP82979 210 aaKnown RBP18.42■□□□□ 0.54
SF3A1-202ENST00000411423 DHX34Q14147 1143 aaKnown RBP18.42■□□□□ 0.54
SF3A1-202ENST00000411423 GBX1Q14549 363 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 DEFB110Q30KQ9 67 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 PAPD7Q5XG87 772 aaKnown RBP18.42■□□□□ 0.54
SF3A1-202ENST00000411423 MRNIPQ6NTE8 343 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 NEPROQ6NW34 567 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 BPHLQ86WA6 291 aaPredicted RBP18.42■□□□□ 0.54
SF3A1-202ENST00000411423 LRRC6Q86X45 466 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 DENND6AQ8IWF6 608 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 SLC30A3Q99726 388 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 XAB2Q9HCS7 855 aaKnown RBP18.42■□□□□ 0.54
SF3A1-202ENST00000411423 TSR3Q9UJK0 312 aaKnown RBP18.42■□□□□ 0.54
SF3A1-202ENST00000411423 PADI1Q9ULC6 663 aa18.42■□□□□ 0.54
SF3A1-202ENST00000411423 S1PR4O95977 384 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 TCP1P17987 556 aaKnown RBP18.41■□□□□ 0.54
SF3A1-202ENST00000411423 TCN2P20062 427 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 OGNP20774 298 aaKnown RBP18.41■□□□□ 0.54
SF3A1-202ENST00000411423 GNG11P61952 73 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 RPS18P62269 152 aaKnown RBP18.41■□□□□ 0.54
SF3A1-202ENST00000411423 DNASE1L3Q13609 305 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 PTK6Q13882 451 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 MSS51Q4VC12 460 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 PLEKHS1Q5SXH7 462 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 TMTC4Q5T4D3 741 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 C16orf46Q6P387 395 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 ZNF549Q6P9A3 640 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 CYB5D1Q6P9G0 228 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms