RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 GSPT2Q8IYD1 628 aaKnown RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 KRT222Q8N1A0 295 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 LILRA3Q8N6C8 439 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 BMPERQ8N8U9 685 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 ABHD11Q8NFV4 315 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 ELMO1Q92556 727 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 FAM122AQ96E09 287 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 ZNHIT2Q9UHR6 403 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 PILRAQ9UKJ1 303 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 PDE10AQ9Y233 779 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 NCOR1O75376 2440 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 PI4KAP42356 2102 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 OR5K3A6NET4 321 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 OR2AG2A6NM03 316 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 H3BQF6 201 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 ZW10O43264 779 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 UGDHO60701 494 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 CFIP05156 583 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 LTA4HP09960 611 aaKnown RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 IL2P60568 153 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 GGTA1PQ4G0N0 100 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 AASDHQ4L235 1098 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 PTRHD1Q6GMV3 140 aaKnown RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 TMEM71Q6P5X7 295 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 ADAMTSL2Q86TH1 951 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 LINC01555Q8NAE3 123 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 OR9A1PQ8NGU1 263 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 EEF1AKMT1Q8WVE0 214 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 CNDP2Q96KP4 475 aaKnown RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 TRIT1Q9H3H1 467 aaKnown RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 GPSM3Q9Y4H4 160 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 A0A1W2PQM1 296 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 C4orf47A7E2U8 309 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 B4E171 279 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 KRT37O76014 449 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 IPO13O94829 963 aaKnown RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 KCNK5O95279 499 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 AKT1P31749 480 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 TSPAN7P41732 249 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 MSH2P43246 934 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 RGS4P49798 205 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 ABATP80404 500 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 INSM1Q01101 510 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 RTP5Q14D33 572 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 LGSNQ5TDP6 509 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 TRAPPC5Q8IUR0 188 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 CYP4X1Q8N118 509 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 OR8K5Q8NH50 307 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 TFGQ92734 400 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 PTERQ96BW5 349 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 RHBDF1Q96CC6 855 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 THAP11Q96EK4 314 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 OR2A14Q96R47 310 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 CCDC77Q9BR77 488 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 PCBD2Q9H0N5 130 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 LRRN3Q9H3W5 708 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 SMOC1Q9H4F8 434 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 SIRT5Q9NXA8 310 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 FTSJ1Q9UET6 329 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 DCDC2Q9UHG0 476 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 TRMT6Q9UJA5 497 aaKnown RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 ADAMTS6Q9UKP5 1117 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 PCDHGA8Q9Y5G5 932 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 IQCF5A8MTL0 148 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 GOLGA8KD6RF30 607 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 GOLGA8TH3BQL2 631 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 TAPBPO15533 448 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 C2P06681 752 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 CTSEP14091 401 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 IMPA1P29218 277 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 ACTR1BP42025 376 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 RAB28P51157 221 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 PRKAA2P54646 552 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 ACTR1AP61163 376 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 SETDB1Q15047 1291 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 DNTTIP2Q5QJE6 756 aaKnown RBP6.8□□□□□ -1.32
LIMA1-202ENST00000394943 ANKS6Q68DC2 871 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 ZNF574Q6ZN55 896 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-202ENST00000394943 CHST15Q7LFX5 561 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-202ENST00000394943 CFAP206Q8IYR0 622 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 D2HGDHQ8N465 521 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 RAB3IL1Q8TBN0 382 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 ZNF483Q8TF39 744 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-202ENST00000394943 TM4SF19Q96DZ7 209 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 ZIM3Q96PE6 472 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 TMEM79Q9BSE2 394 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 PELI2Q9HAT8 420 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 CRYL1Q9Y2S2 319 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 PCDHGA3Q9Y5H0 932 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 EXOC1LA0A1B0GW35 172 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 OPA1O60313 960 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 GDF9O60383 454 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 PROCP04070 461 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 RPS17P08708 135 aaKnown RBP6.8□□□□□ -1.32
LIMA1-202ENST00000394943 SLC35G4P0C7Q5 338 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 EPORP19235 508 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 CSF2RBP32927 897 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 SERPINB5P36952 375 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 HALP42357 657 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms