RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 FAXDC2Q96IV6 333 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 MAP3K3Q99759 626 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 PAAF1Q9BRP4 392 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 WRAP53Q9BUR4 548 aaKnown RBP-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 CLMPQ9H6B4 373 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 C10orf88Q9H8K7 445 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 TBC1D23Q9NUY8 699 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 ARHGAP26Q9UNA1 814 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 KLK5Q9Y337 293 aaPredicted RBP-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 NFE2L3Q9Y4A8 694 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 SPATA31D1Q6ZQQ2 1576 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 ATMQ13315 3056 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 ARHGAP23Q9P227 1491 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 ABHD14A-ACY1A0A1B0GW23 586 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 TYW5A2RUC4 315 aaKnown RBP-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 FAM231BA6NCW3 169 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 WASHC1A8K0Z3 465 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 WASH3PC4AMC7 463 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 K7ESF4 209 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 LGALS9O00182 355 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 DNM1LO00429 736 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 KRT19P08727 400 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 ZKSCAN1P17029 563 aaPredicted RBP-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 TSFMP43897 325 aaKnown RBP-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 RXRGP48443 463 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 CDKN1CP49918 316 aaPredicted RBP-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 MEOX2P50222 304 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 ARSEP51690 589 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 SLC18A2Q05940 514 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 BLMHQ13867 455 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 CSHL1Q14406 222 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 ESCO2Q56NI9 601 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 Q5BKY6 102 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 FAXCQ5TGI0 409 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 EFCAB2Q5VUJ9 269 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 CES4AQ5XG92 561 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 FRG2Q64ET8 278 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 ZNF770Q6IQ21 691 aaPredicted RBP-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 ANKRD26P1Q6NSI1 321 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 CYB5D1Q6P9G0 228 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 CRTC1Q6UUV9 634 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 WASH2PQ6VEQ5 465 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 UNC13DQ70J99 1090 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 TTC30AQ86WT1 665 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 CATSPER3Q86XQ3 398 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 RNF130Q86XS8 419 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 CROCCP3Q8IVE0 287 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 DHX40Q8IX18 779 aaKnown RBP-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 C4orf32Q8N8J7 132 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 LRTM2Q8N967 370 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 KBTBD8Q8NFY9 601 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 MARCH1Q8TCQ1 289 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 OTUD7AQ8TE49 926 aaPredicted RBP-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 C2CD4CQ8TF44 421 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 COG1Q8WTW3 980 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 PPP1R16AQ96I34 528 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 CGRRF1Q99675 332 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 STRA6Q9BX79 667 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 AS3MTQ9HBK9 375 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 PDP2Q9P2J9 529 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 B3GAT1Q9P2W7 334 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 RNF14Q9UBS8 474 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 TPCN1Q9ULQ1 816 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 ANKRD6Q9Y2G4 727 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 CABIN1Q9Y6J0 2220 aa-0.96□□□□□ -2.56
RNU6-540P-201ENST00000384622 LAMC1P11047 1609 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 PCNTO95613 3336 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 RALGAPA1Q6GYQ0 2036 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 LOC105369274A0A096LPK9 316 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 LOC102723532A0A0G2JNH3 316 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 OR5K3A6NET4 321 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 EPOPA6NHQ4 379 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 ZSCAN5BA6NJL1 495 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 H3BMH7 237 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 MED6O75586 246 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 LETM1O95202 739 aaPredicted RBP-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 MT-CO1P00395 513 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 IGHEP01854 428 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 SMR3BP02814 79 aaPredicted RBP-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 GPIP06744 558 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 ITGA5P08648 1049 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 RNH1P13489 461 aaKnown RBP-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 ITGAXP20702 1163 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 DNASE1P24855 282 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 SLC7A1P30825 629 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 ATP4BP51164 291 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 CDH11P55287 796 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 SUMO3P55854 103 aaPredicted RBP-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 IL9RQ01113 521 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 PAX5Q02548 391 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 TNFRSF9Q07011 255 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 ALKBH1Q13686 389 aaKnown RBP-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 ATP1A4Q13733 1029 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 LTB4RQ15722 352 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 EIF2S3LQ2VIR3 472 aaKnown RBP-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 C3orf38Q5JPI3 329 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 FAM102BQ5T8I3 360 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 LEMD1Q68G75 181 aa-0.97□□□□□ -2.56
RNU6-540P-201ENST00000384622 BRAT1Q6PJG6 821 aa-0.97□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms