RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 MSANTD2Q6P1R3 559 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 ZNF773Q6PK81 442 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 ZNF641Q96N77 438 aaPredicted RBP6.42□□□□□ -1.38
SMC1A-202ENST00000375340 MUS81Q96NY9 551 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 ITM2CQ9NQX7 267 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 UBAP1Q9NZ09 502 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 MRPS7Q9Y2R9 242 aaKnown RBP6.42□□□□□ -1.38
SMC1A-202ENST00000375340 RPLP2P05387 115 aaKnown RBP6.42□□□□□ -1.38
SMC1A-202ENST00000375340 PAICSP22234 425 aaKnown RBP6.42□□□□□ -1.38
SMC1A-202ENST00000375340 C2orf80Q0P641 193 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 CMTR2Q8IYT2 770 aaKnown RBP6.42□□□□□ -1.38
SMC1A-202ENST00000375340 PRICKLE1Q96MT3 831 aaPredicted RBP6.42□□□□□ -1.38
SMC1A-202ENST00000375340 ACTR3BQ9P1U1 418 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 PTGFRNQ9P2B2 879 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 RHCGQ9UBD6 479 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 ASB3Q9Y575 518 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 CLPXO76031 633 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 PGRP06401 933 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 ELFN1P0C7U0 828 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 IL4RP24394 825 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 GJA8P48165 433 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 POLR2LP62875 67 aaKnown RBP6.42□□□□□ -1.38
SMC1A-202ENST00000375340 SCARB2Q14108 478 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 PIK3R6Q5UE93 754 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 CDC73Q6P1J9 531 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 NEK5Q6P3R8 708 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 C16orf62Q7Z3J2 963 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 SLC9A7Q96T83 725 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 DERL2Q9GZP9 239 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 GKN1Q9NS71 199 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 RAD18Q9NS91 495 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 CNMDO75829 334 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 GNAO1P09471 354 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 PRKAR1AP10644 381 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 FOXA1P55317 472 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 RPS14P62263 151 aaKnown RBP6.42□□□□□ -1.38
SMC1A-202ENST00000375340 NIPAL1Q6NVV3 410 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 SMYD1Q8NB12 490 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 ZNF671Q8TAW3 534 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 DIRAS2Q96HU8 199 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 ERVK-18Q9QC07 812 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 PLAGL1Q9UM63 463 aa6.42□□□□□ -1.38
SMC1A-202ENST00000375340 A0A0J9YVX5 310 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 SLC35F4A4IF30 521 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 CASKO14936 926 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 GBAP04062 536 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 ASGR1P07306 291 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 GABRR2P28476 465 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 RPS3AP61247 264 aaKnown RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 B3GNT9Q6UX72 402 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 PACRGLQ8N7B6 248 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 NFKBIDQ8NI38 313 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 PTPN18Q99952 460 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 COPS4Q9BT78 406 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 RPF2Q9H7B2 306 aaKnown RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 CD320Q9NPF0 282 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 MAFKO60675 156 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 CLDN7O95471 211 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 SNAI1O95863 264 aaPredicted RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 CATP04040 527 aaKnown RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 GLDCP23378 1020 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 IZUMO1Q8IYV9 350 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 ARNTL2Q8WYA1 636 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 RTP4Q96DX8 246 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 RPRD1BQ9NQG5 326 aaKnown RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 FZD4Q9ULV1 537 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 ATAD5Q96QE3 1844 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 COL24A1Q17RW2 1714 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 BMP10O95393 424 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 EIF2S1P05198 315 aaKnown RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 OR2B6P58173 313 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 TSTQ16762 297 aaKnown RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 FAM219BQ5XKK7 198 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 NANOGP8Q6NSW7 305 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 TRIM40Q6P9F5 258 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 ARL14EPQ8N8R7 260 aaPredicted RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 ATL1Q8WXF7 558 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 PLD4Q96BZ4 506 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 ARMC5Q96C12 935 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 AURKBQ96GD4 344 aaPredicted RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 SLC38A2Q96QD8 506 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 CCDC3Q9BQI4 270 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 NANOGQ9H9S0 305 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 ZIM2Q9NZV7 527 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 EVPLQ92817 2033 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 OR6C75A6NL08 312 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 EFCAB14O75071 495 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 ZBTB48P10074 688 aaPredicted RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 PTGER3P43115 390 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 ATP12AP54707 1039 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 HNRNPDQ14103 355 aaKnown RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 ZNF697Q5TEC3 545 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 RAB43Q86YS6 212 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 GATA6Q92908 595 aa6.41□□□□□ -1.38
SMC1A-202ENST00000375340 NLE1Q9NVX2 485 aaPredicted RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 GMPR2Q9P2T1 348 aaKnown RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 ARIH1Q9Y4X5 557 aaPredicted RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 EEDO75530 441 aaKnown RBP6.41□□□□□ -1.38
SMC1A-202ENST00000375340 ERAL1O75616 437 aaKnown RBP6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms