RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 SRCP12931 536 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 TDGF1P13385 188 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 MAPK8P45983 427 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 MRPL19P49406 292 aaKnown RBP15.21■□□□□ 0.03
CCDC40-202ENST00000374876 CCNHP51946 323 aaPredicted RBP15.21■□□□□ 0.03
CCDC40-202ENST00000374876 NUBP1P53384 320 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 ERVK-8P63133 956 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 LIN52Q52LA3 116 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 C6orf52Q5T4I8 152 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 SLC15A3Q8IY34 581 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 RBFAQ8N0V3 343 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 PGBD3Q8N328 593 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 DCBLD1Q8N8Z6 715 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 OR52B6Q8NGF0 335 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 ZUFSPQ96AP4 578 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 TPSD1Q9BZJ3 242 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 NOL11Q9H8H0 719 aaKnown RBP15.21■□□□□ 0.03
CCDC40-202ENST00000374876 SLC24A3Q9HC58 644 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 PRSS16Q9NQE7 514 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 GMPR2Q9P2T1 348 aaKnown RBP15.21■□□□□ 0.03
CCDC40-202ENST00000374876 GNPTGQ9UJJ9 305 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 FBXO4Q9UKT5 387 aa15.21■□□□□ 0.03
CCDC40-202ENST00000374876 MUC22E2RYF6 1773 aaPredicted RBP15.21■□□□□ 0.03
CCDC40-202ENST00000374876 ENO4A6NNW6 628 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 FXYD1O00168 92 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 SLC22A3O75751 556 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 TRBC1P01850 177 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 HSD17B1P14061 328 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 ITGALP20701 1170 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 SLC6A2P23975 617 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 FNTBP49356 437 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 RGS4P49798 205 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 BNIP2Q12982 314 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 NFYCQ13952 458 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 RCAN2Q14206 197 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 STARD3Q14849 445 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 HNRNPA1L2Q32P51 320 aaKnown RBP15.21■□□□□ 0.02
CCDC40-202ENST00000374876 ATP6AP1LQ52LC2 224 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 SNX20Q7Z614 316 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 CACUL1Q86Y37 369 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 CAMKK1Q8N5S9 505 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 FNDC5Q8NAU1 212 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 OR2T11Q8NH01 316 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 FRS2Q8WU20 508 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 VPS33AQ96AX1 596 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 CDK15Q96Q40 435 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 C1orf50Q9BV19 199 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 MKRN2Q9H000 416 aaKnown RBP15.21■□□□□ 0.02
CCDC40-202ENST00000374876 UBAP1Q9NZ09 502 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 SUN2Q9UH99 717 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 APPL1Q9UKG1 709 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 CNOT6Q9ULM6 557 aaKnown RBP15.21■□□□□ 0.02
CCDC40-202ENST00000374876 HS3ST2Q9Y278 367 aa15.21■□□□□ 0.02
CCDC40-202ENST00000374876 MYO15AQ9UKN7 3530 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 CCDC154A6NI56 674 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 RAD51BO15315 384 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 ZNF26P17031 533 aaPredicted RBP15.2■□□□□ 0.02
CCDC40-202ENST00000374876 GABRG2P18507 467 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 ITGB6P18564 788 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 ATP6V1B2P21281 511 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 RPS3P23396 243 aaKnown RBP eCLIP15.2■□□□□ 0.02
CCDC40-202ENST00000374876 GKP32189 559 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 ERVPABLB-1P60509 514 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 CDKL1Q00532 357 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 NFATC2Q13469 925 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 PCBP2Q15366 365 aaKnown RBP eCLIP15.2■□□□□ 0.025e-7■■■■■ 29.1
CCDC40-202ENST00000374876 NRF1Q16656 503 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 PDCD4Q53EL6 469 aaKnown RBP15.2■□□□□ 0.02
CCDC40-202ENST00000374876 C9orf64Q5T6V5 341 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 MYO1HQ8N1T3 1032 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 METTL6Q8TCB7 284 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 GRIN3AQ8TCU5 1115 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 SLC45A3Q96JT2 553 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 TEX37Q96LM6 180 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 BOCQ9BWV1 1114 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 TRIM54Q9BYV2 358 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 BRINP2Q9C0B6 783 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 TNKS2Q9H2K2 1166 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 ATP13A3Q9H7F0 1226 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 COQ10BQ9H8M1 238 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 SLC52A3Q9NQ40 469 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 CMTM6Q9NX76 183 aa15.2■□□□□ 0.02
CCDC40-202ENST00000374876 H0YJX3 145 aa15.19■□□□□ 0.02
CCDC40-202ENST00000374876 FFAR2O15552 330 aa15.19■□□□□ 0.02
CCDC40-202ENST00000374876 HTRA2O43464 458 aaPredicted RBP15.19■□□□□ 0.02
CCDC40-202ENST00000374876 SOCS5O75159 536 aa15.19■□□□□ 0.02
CCDC40-202ENST00000374876 CLDN7O95471 211 aa15.19■□□□□ 0.02
CCDC40-202ENST00000374876 APBB3O95704 486 aa15.19■□□□□ 0.02
CCDC40-202ENST00000374876 FESP07332 822 aa15.19■□□□□ 0.02
CCDC40-202ENST00000374876 HNF1BP35680 557 aa15.19■□□□□ 0.02
CCDC40-202ENST00000374876 POLR2JP52435 117 aaKnown RBP15.19■□□□□ 0.02
CCDC40-202ENST00000374876 UFM1P61960 85 aa15.19■□□□□ 0.02
CCDC40-202ENST00000374876 INPP5AQ14642 412 aa15.19■□□□□ 0.02
CCDC40-202ENST00000374876 SPATS1Q496A3 300 aa15.19■□□□□ 0.02
CCDC40-202ENST00000374876 MTX3Q5HYI7 312 aa15.19■□□□□ 0.02
CCDC40-202ENST00000374876 C6orf136Q5SQH8 315 aa15.19■□□□□ 0.02
CCDC40-202ENST00000374876 IRAK1BP1Q5VVH5 260 aa15.19■□□□□ 0.02
CCDC40-202ENST00000374876 LETMD1Q6P1Q0 360 aa15.19■□□□□ 0.02
CCDC40-202ENST00000374876 SBSNQ6UWP8 590 aa15.19■□□□□ 0.02
CCDC40-202ENST00000374876 Q6ZVU0 165 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms