RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 ABI3BPQ7Z7G0 1075 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 KMT5CQ86Y97 462 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 PTGR2Q8N8N7 351 aaPredicted RBP8.97□□□□□ -0.97
UPF2-202ENST00000357604 DNASE2BQ8WZ79 361 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 ART5Q96L15 291 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 CCT7Q99832 543 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 ASPSCR1Q9BZE9 553 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 KLHL14Q9P2G3 628 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 PLCL2Q9UPR0 1127 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 ACTL7BQ9Y614 415 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 MROH6A6NGR9 719 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 PHGDHO43175 533 aaKnown RBP8.97□□□□□ -0.97
UPF2-202ENST00000357604 MMP2P08253 660 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 PYGBP11216 843 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 POLR2CP19387 275 aaPredicted RBP8.97□□□□□ -0.97
UPF2-202ENST00000357604 CTSKP43235 329 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 CLK3P49761 638 aaKnown RBP8.97□□□□□ -0.97
UPF2-202ENST00000357604 NAE1Q13564 534 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 SIX1Q15475 284 aaPredicted RBP8.97□□□□□ -0.97
UPF2-202ENST00000357604 RPE65Q16518 533 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 CDKL4Q5MAI5 379 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 TRIM40Q6P9F5 258 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 GCNT7Q6ZNI0 430 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 CCDC74AQ96AQ1 378 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 SIKE1Q9BRV8 207 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 TUBB6Q9BUF5 446 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 TRIM55Q9BYV6 548 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 ILKAPQ9H0C8 392 aaPredicted RBP8.97□□□□□ -0.97
UPF2-202ENST00000357604 RMND5AQ9H871 391 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 PRDM8Q9NQV8 689 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.97□□□□□ -0.971e-6■■■□□ 16.3
UPF2-202ENST00000357604 ZFR2Q9UPR6 939 aaKnown RBP8.97□□□□□ -0.97
UPF2-202ENST00000357604 BLACEA4D250 179 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 OR51F1A6NGY5 319 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 PNLIPP16233 465 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 GLB1P16278 677 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 ALAS2P22557 587 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 PREPP48147 710 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 RELL1Q8IUW5 271 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 TRPV3Q8NET8 790 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 WDR36Q8NI36 951 aaKnown RBP8.97□□□□□ -0.97
UPF2-202ENST00000357604 MR1Q95460 341 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 CENPTQ96BT3 561 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 CAMK1GQ96NX5 476 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 SERPINI1Q99574 410 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 BCAP29Q9UHQ4 241 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 MBD1Q9UIS9 605 aaPredicted RBP8.97□□□□□ -0.97
UPF2-202ENST00000357604 OARD1Q9Y530 152 aa8.97□□□□□ -0.97
UPF2-202ENST00000357604 CCDC187A0A096LP49 1063 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 LMO7DNF2Z398 122 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 GOLGA8RI6L899 631 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 PCDHGA12O60330 932 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 KRT16P08779 473 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 NR1D1P20393 614 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 EEF1DP29692 281 aaKnown RBP8.96□□□□□ -0.97
UPF2-202ENST00000357604 RAB28P51157 221 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 ADARP55265 1226 aaKnown RBP8.96□□□□□ -0.97
UPF2-202ENST00000357604 OCRLQ01968 901 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 TMEM259Q4ZIN3 620 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 CPNE9Q8IYJ1 553 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 DEFB124Q8NES8 71 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 NUP210Q8TEM1 1887 aaPredicted RBP8.96□□□□□ -0.97
UPF2-202ENST00000357604 CNDP1Q96KN2 507 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 MRTO4Q9UKD2 239 aaKnown RBP8.96□□□□□ -0.97
UPF2-202ENST00000357604 E7EQ34 232 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 K7ESF4 209 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 JAK1P23458 1154 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 CD82P27701 267 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 FOXC1Q12948 553 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 KCTD11Q693B1 232 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 LDB1Q86U70 411 aaPredicted RBP8.96□□□□□ -0.97
UPF2-202ENST00000357604 SAMD14Q8IZD0 417 aaPredicted RBP8.96□□□□□ -0.97
UPF2-202ENST00000357604 TCTN2Q96GX1 697 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 TRMOQ9BU70 441 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 AP1M2Q9Y6Q5 423 aa8.96□□□□□ -0.97
UPF2-202ENST00000357604 SHISA7A6NL88 538 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 EFCAB7A8K855 629 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 LDB2O43679 373 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 CLDN9O95484 217 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 XRCC1P18887 633 aaPredicted RBP8.96□□□□□ -0.98
UPF2-202ENST00000357604 GNAZP19086 355 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 BUD31P41223 144 aaPredicted RBP8.96□□□□□ -0.98
UPF2-202ENST00000357604 MAGOHP61326 146 aaKnown RBP8.96□□□□□ -0.98
UPF2-202ENST00000357604 DDX39BQ13838 428 aaKnown RBP8.96□□□□□ -0.98
UPF2-202ENST00000357604 CCDC6Q16204 474 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 ALG11Q2TAA5 492 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 SGO1Q5FBB7 561 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 PSAPL1Q6NUJ1 521 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 KDM7AQ6ZMT4 941 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 GPRIN3Q6ZVF9 776 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 TMPRSS11BQ86T26 416 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 MREGQ8N565 214 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 ANKRD7Q92527 254 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 LRRC4CQ9HCJ2 640 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 MIEF1Q9NQG6 463 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 THSD1Q9NS62 852 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 TREX1Q9NSU2 369 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 TMEM184CQ9NVA4 438 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 OR6C2Q9NZP2 312 aa8.96□□□□□ -0.98
UPF2-202ENST00000357604 MTO1Q9Y2Z2 717 aaKnown RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms