RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 WWP2O00308 870 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 DNTTP04053 509 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 HOXD13P35453 343 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 TMBIM6P55061 237 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 TCEA2Q15560 299 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 TARBP2Q15633 366 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 TLDC1Q6P9B6 456 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 BEND5Q7L4P6 421 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 LGI4Q8N135 537 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 OR7D4Q8NG98 312 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 SMURF2Q9HAU4 748 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 GRIP1Q9Y3R0 1128 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 IFNA16P05015 189 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 OR4Q2P0C623 313 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 PCSK2P16519 638 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 PTGER3P43115 390 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 TARDBPQ13148 414 aaKnown RBP eCLIP19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 RTL4Q6ZR62 310 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 RAVER1Q8IY67 606 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 SOX17Q9H6I2 414 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 MAFBQ9Y5Q3 323 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 IRF6O14896 467 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 GLDCP23378 1020 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 SOWAHAQ2M3V2 549 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 KLHL22Q53GT1 634 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 PRAMEF19Q5SWL8 479 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 LINGO4Q6UY18 593 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 ZNF557Q8N988 423 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 POLE4Q9NR33 117 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 ZIM2Q9NZV7 527 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 EVLQ9UI08 416 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 H3BM21 787 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 ZNF132P52740 706 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 SMCO1Q147U7 214 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 RPS27LQ71UM5 84 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 SERPINA9Q86WD7 417 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 ATAD1Q8NBU5 361 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 DENND1AQ8TEH3 1009 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 IRGQQ8WZA9 623 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 SUSD6Q92537 303 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 AURKBQ96GD4 344 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 CCDC115Q96NT0 180 aa19.18■□□□□ 0.66
CCDC88B-202ENST00000356786 H3BNH8 94 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 PER2O15055 1255 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 VARSP26640 1264 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 UFM1P61960 85 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 MAB21L1Q13394 359 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 GANABQ14697 944 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 MYBPC3Q14896 1274 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 OR10Q1Q8NGQ4 319 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 LRRC15Q8TF66 581 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 CRELD1Q96HD1 420 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 PCED1BQ96HM7 432 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 TSPAN18Q96SJ8 248 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 SLC30A2Q9BRI3 323 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 DUSP26Q9BV47 211 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 RNF6Q9Y252 685 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 A8MV72 311 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 SNAP29O95721 258 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 CD72P21854 359 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 ELK4P28324 431 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 SPAM1P38567 509 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 NOMO2Q5JPE7 1267 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 SLC43A3Q8NBI5 491 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 RUVBL1Q9Y265 456 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 KLRG2A4D1S0 409 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 ISM1B1AKI9 464 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 CLIC1O00299 241 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 SLC35G4P0C7Q5 338 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 ZNF806P0C7X5 589 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 PAX3P23760 479 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 CASP9P55211 416 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 LILRA4P59901 499 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 DEFA5Q01523 94 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 CBLBQ13191 982 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 BTG3Q14201 252 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 TSTQ16762 297 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 DPY19L1Q2PZI1 675 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 ADNP2Q6IQ32 1131 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 ZNF696Q9H7X3 374 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 CTPS2Q9NRF8 586 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 PLD6Q8N2A8 252 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 C2orf73Q8N5S3 287 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 HAVCR1Q96D42 359 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 TWNKQ96RR1 684 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 ADAM7Q9H2U9 754 aa19.17■□□□□ 0.66
CCDC88B-202ENST00000356786 MYBPHLA2RUH7 354 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 DIRAS1O95057 198 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 PORP16435 677 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 CD52P31358 61 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 RPS3AP61247 264 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 OR13C4Q8NGS5 318 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 CXorf40AQ8TE69 158 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 TIFAQ96CG3 184 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 FBXL18Q96ME1 805 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 FRMD6Q96NE9 622 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 MED11Q9P086 117 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 GIMAP2Q9UG22 337 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 FBXO10Q9UK96 956 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms