RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 TMEM199Q8N511 208 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 KLHL6Q8WZ60 621 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 TMEM121BQ9BXQ6 578 aaPredicted RBP12.64□□□□□ -0.39
USP47-202ENST00000339865 RANBP3Q9H6Z4 567 aaPredicted RBP12.64□□□□□ -0.39
USP47-202ENST00000339865 TMEM45AQ9NWC5 275 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 UBXN7O94888 489 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 DLSTP36957 453 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 SYT16Q17RD7 645 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 ZNF484Q5JVG2 852 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 NELFAQ9H3P2 528 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 F5H0A9 414 aaPredicted RBP12.64□□□□□ -0.39
USP47-202ENST00000339865 GPIP06744 558 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 GNG2P59768 71 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 GPR157Q5UAW9 335 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 CMC1Q7Z7K0 106 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 GPR135Q8IZ08 494 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 KLHL36Q8N4N3 616 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 METTL21AQ8WXB1 218 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 HBEGFQ99075 208 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 CDT1Q9H211 546 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 HCN4Q9Y3Q4 1203 aa12.64□□□□□ -0.39
USP47-202ENST00000339865 J3QRK9 145 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 TGDSO95455 350 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 ERP29P30040 261 aaKnown RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 DUSP4Q13115 394 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 ZNF674Q2M3X9 581 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 TPRG1LQ5T0D9 272 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 KLHL35Q6PF15 583 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 ARL9Q6T311 187 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 PGAM4Q8N0Y7 254 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 FAM156AQ8NDB6 213 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 FAM84BQ96KN1 310 aaPredicted RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 WDR6Q9NNW5 1121 aaKnown RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 POLE4Q9NR33 117 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 SLC17A7Q9P2U7 560 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 VSTM5A8MXK1 200 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 ELFN1P0C7U0 828 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 EFNA1P20827 205 aaPredicted RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 MC4RP32245 332 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 GNPDA1P46926 289 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 IDH3GP51553 393 aaPredicted RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 GANABQ14697 944 aaKnown RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 GAL3ST4Q96RP7 486 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 SLC28A3Q9HAS3 691 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 HMX1Q9NP08 348 aaPredicted RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 CACNB4O00305 520 aaPredicted RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 TBL1XO60907 577 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 KERAO60938 352 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 MYCLP1P12525 358 aaPredicted RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 GNMTQ14749 295 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 SLC8B1Q6J4K2 584 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 MARVELD2Q8N4S9 558 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 TWIST2Q8WVJ9 160 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 FBXL8Q96CD0 374 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 PCDHB18PQ96TA0 734 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 SLC30A2Q9BRI3 323 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 FARSBQ9NSD9 589 aaKnown RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 RPL26L1Q9UNX3 145 aaKnown RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 XKP51811 444 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 RNF4P78317 190 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 MFSD13AQ14CX5 517 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 ZNF773Q6PK81 442 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 FBXO16Q8IX29 292 aaPredicted RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 PIAS4Q8N2W9 510 aaPredicted RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 SVOPLQ8N434 492 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 ALLCQ8N6M5 410 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 CREB3L1Q96BA8 519 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 TCEAL4Q96EI5 215 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 PDGFDQ9GZP0 370 aaPredicted RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 ABCC10Q5T3U5 1492 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 CFL1P23528 166 aaKnown RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 EPHX2P34913 555 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 KLF10Q13118 480 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 CHIT1Q13231 466 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 ZACNQ401N2 412 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 SERPINA13PQ6UXR4 307 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 ZNF578Q96N58 590 aaPredicted RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.63□□□□□ -0.395e-7■■■□□ 17.6
USP47-202ENST00000339865 TAS2R1Q9NYW7 299 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 TBX22Q9Y458 520 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 PAPSS1O43252 624 aaPredicted RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 CLN5O75503 358 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 ALDH3B1P43353 468 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 EIF1AXP47813 144 aaKnown RBP12.63□□□□□ -0.39
USP47-202ENST00000339865 DMWDQ09019 674 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 PEX6Q13608 980 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 LMLNQ96KR4 655 aa12.63□□□□□ -0.39
USP47-202ENST00000339865 GNRHRP30968 328 aa12.62□□□□□ -0.39
USP47-202ENST00000339865 CAP2P40123 477 aa12.62□□□□□ -0.39
USP47-202ENST00000339865 GTF2A2P52657 109 aa12.62□□□□□ -0.39
USP47-202ENST00000339865 CD47Q08722 323 aa12.62□□□□□ -0.39
USP47-202ENST00000339865 PROKR2Q8NFJ6 384 aa12.62□□□□□ -0.39
USP47-202ENST00000339865 OR7G2Q8NG99 324 aa12.62□□□□□ -0.39
USP47-202ENST00000339865 KANSL3Q9P2N6 904 aa12.62□□□□□ -0.39
USP47-202ENST00000339865 TCRBV9S1A1TA0A576 114 aa12.62□□□□□ -0.39
USP47-202ENST00000339865 SHOX2O60902 331 aaPredicted RBP12.62□□□□□ -0.39
USP47-202ENST00000339865 TSHRP16473 764 aa12.62□□□□□ -0.39
USP47-202ENST00000339865 OC90Q02509 493 aaPredicted RBP12.62□□□□□ -0.39
USP47-202ENST00000339865 BNIP3Q12983 259 aa12.62□□□□□ -0.39
USP47-202ENST00000339865 CRB2Q5IJ48 1285 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms