RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 DUSP28Q4G0W2 176 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 PYHIN1Q6K0P9 492 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 ZNF781Q8N8C0 355 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 CLEC4CQ8WTT0 213 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 DNAJA4Q8WW22 397 aaPredicted RBP12.42□□□□□ -0.42
SDC3-201ENST00000336798 CARS2Q9HA77 564 aaKnown RBP12.42□□□□□ -0.42
SDC3-201ENST00000336798 RIMKLBQ9ULI2 386 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 TCAF1Q9Y4C2 921 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 NWD1Q149M9 1564 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 GSC2O15499 205 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 RHOQP17081 205 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 GRK5P34947 590 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 EIF2S3LQ2VIR3 472 aaKnown RBP12.42□□□□□ -0.42
SDC3-201ENST00000336798 C4orf46Q504U0 113 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 VARS2Q5ST30 1063 aaKnown RBP12.42□□□□□ -0.42
SDC3-201ENST00000336798 CYP2U1Q7Z449 544 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 IRF2BP2Q7Z5L9 587 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 TMEM145Q8NBT3 493 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 LSM14AQ8ND56 463 aaKnown RBP12.42□□□□□ -0.42
SDC3-201ENST00000336798 PYCR2Q96C36 320 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 LINGO3P0C6S8 592 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 ADAM8P78325 824 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 LRRC32Q14392 662 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 ZMYND11Q15326 602 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 ARSHQ5FYA8 562 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 MLIPQ5VWP3 458 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 ZYG11AQ6WRX3 759 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 ZSWIM3Q96MP5 696 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 COMMD3Q9UBI1 195 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 TLX3O43711 291 aaPredicted RBP12.41□□□□□ -0.42
SDC3-201ENST00000336798 TGFB1P01137 390 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 FMO3P31513 532 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 OLR1P78380 273 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 PDE12Q6L8Q7 609 aaKnown RBP12.41□□□□□ -0.42
SDC3-201ENST00000336798 VSTM1Q6UX27 236 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 ECHDC2Q86YB7 292 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 PLD5Q8N7P1 536 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 SRFBP1Q8NEF9 429 aaKnown RBP12.41□□□□□ -0.42
SDC3-201ENST00000336798 DNAJA3Q96EY1 480 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 LDAHQ9H6V9 325 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 PTPRMP28827 1452 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 OR51F1A6NGY5 319 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 ZNF726A6NNF4 738 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 FSCN2O14926 492 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 EDF1O60869 148 aaKnown RBP12.41□□□□□ -0.42
SDC3-201ENST00000336798 CILPO75339 1184 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 IFI30P13284 250 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 TSHRP16473 764 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 ZNF16P17020 682 aaPredicted RBP12.41□□□□□ -0.42
SDC3-201ENST00000336798 MAZP56270 477 aaKnown RBP12.41□□□□□ -0.42
SDC3-201ENST00000336798 FKBP1AP62942 108 aaKnown RBP12.41□□□□□ -0.42
SDC3-201ENST00000336798 CA9Q16790 459 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 SPIN3Q5JUX0 258 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 ABHD15Q6UXT9 468 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 RAB43Q86YS6 212 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 MMAAQ8IVH4 418 aaKnown RBP12.41□□□□□ -0.42
SDC3-201ENST00000336798 MLXQ9UH92 298 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 SLC35F4A4IF30 521 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 ELOA3DA6NLF2 546 aaPredicted RBP12.41□□□□□ -0.42
SDC3-201ENST00000336798 BPNT1O95861 308 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 ALPPP05187 535 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 ACTR1BP42025 376 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 ACTR1AP61163 376 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 PHC1P78364 1004 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 ELOA3BQ3SY89 546 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 KLHL26Q53HC5 615 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 CBR4Q8N4T8 237 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 MREGQ8N565 214 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 RBM15BQ8NDT2 890 aaKnown RBP12.41□□□□□ -0.42
SDC3-201ENST00000336798 ELOA3Q8NG57 546 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 TNFRSF25Q93038 417 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 SPATA7Q9P0W8 599 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 CLCA3PQ9Y6N3 262 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 ITSN1Q15811 1721 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 A0A0J9YVX5 310 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 MYBPHLA2RUH7 354 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 KERAO60938 352 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 PEX14O75381 377 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 VARSP26640 1264 aaKnown RBP12.41□□□□□ -0.42
SDC3-201ENST00000336798 HSD11B1P28845 292 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 CHRNA4P43681 627 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 CSTF1Q05048 431 aaKnown RBP12.41□□□□□ -0.42
SDC3-201ENST00000336798 DPYSQ14117 519 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 METTL21CQ5VZV1 264 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 TMEM214Q6NUQ4 689 aaKnown RBP12.41□□□□□ -0.42
SDC3-201ENST00000336798 LAPTM4BQ86VI4 370 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 NPAS4Q8IUM7 802 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 PXDNQ92626 1479 aa12.41□□□□□ -0.42
SDC3-201ENST00000336798 CBLP22681 906 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 AIF1P55008 147 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 PPIGQ13427 754 aaKnown RBP eCLIP12.4□□□□□ -0.42
SDC3-201ENST00000336798 ZNF234Q14588 700 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 GPR153Q6NV75 609 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 SCAMP5Q8TAC9 235 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 SLC44A1Q8WWI5 657 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 TTYH2Q9BSA4 534 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 GDAP2Q9NXN4 497 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 ZNF639Q9UID6 485 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 TEX46H3BTG2 121 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 MAP2K7O14733 419 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms