RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ARL5AQ9Y689 179 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 TRIM43BA6NCK2 446 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ZSCAN9O15535 394 aaPredicted RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ECI2O75521 394 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF682O95780 498 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 IGLV3-27P01718 113 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 SLC35E2BP0CK96 405 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 CTHP32929 405 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 TNFRSF4P43489 277 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 MAPK10P53779 464 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 TAS1R1Q7RTX1 841 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 FITM2Q8N6M3 262 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ADAMTS15Q8TE58 950 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 TRIM43Q96BQ3 446 aaPredicted RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 RCN3Q96D15 328 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 PDLIM5Q96HC4 596 aaKnown RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 HIC2Q96JB3 615 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF778Q96MU6 729 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 KCTD14Q9BQ13 255 aaPredicted RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 EPS8L2Q9H6S3 715 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 REEP1Q9H902 201 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 TMEM30AQ9NV96 361 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 H2AFY2Q9P0M6 372 aaPredicted RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 SLC2A6Q9UGQ3 507 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 SPG11Q96JI7 2443 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ANKRD12Q6UB98 2062 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 NCOR2Q9Y618 2525 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 HTRA2O43464 458 aaPredicted RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 LDB2O43679 373 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 GPIP06744 558 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ADRB3P13945 408 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 PRR5P85299 388 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 GTF2H2Q13888 395 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 LRRC23Q53EV4 343 aaPredicted RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 GTF2H2CQ6P1K8 395 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 CYP20A1Q6UW02 462 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ENPP7Q6UWV6 458 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF614Q8N883 585 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ATG16L2Q8NAA4 619 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 OR9A1PQ8NGU1 263 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 OR2T34Q8NGX1 318 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 GDPD5Q8WTR4 605 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF358Q9NW07 568 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 C6orf203Q9P0P8 240 aaPredicted RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 PDP2Q9P2J9 529 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF490Q9ULM2 529 aaPredicted RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 GPR34Q9UPC5 381 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ADARP55265 1226 aaKnown RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 DLG1Q12959 904 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 CCNYL2Q5T2Q4 361 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 EID3Q8N140 333 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ASB16Q96NS5 453 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 OSBPL10Q9BXB5 764 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 MS4A12Q9NXJ0 267 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 HCSTQ9UBK5 93 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF451Q9Y4E5 1061 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 K7ERQ8 282 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 SMAD6O43541 496 aaKnown RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 RNGTTO60942 597 aaKnown RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 TMEM127O75204 238 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 UMPSP11172 480 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 HNRNPA2B1P22626 353 aaKnown RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 CD68P34810 354 aaPredicted RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ELOCQ15369 112 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 PGS1Q32NB8 556 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 RAB6CQ53S08 254 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 SPIN4Q56A73 249 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 C9orf64Q5T6V5 341 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 TMEM164Q5U3C3 297 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF544Q6NX49 715 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 LIPIQ6XZB0 460 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 SLC36A4Q6YBV0 504 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 NLRP8Q86W28 1048 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 STX19Q8N4C7 294 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 NELL1Q92832 810 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 CMTM7Q96FZ5 175 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ZFYVE19Q96K21 471 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 RAB6CQ9H0N0 254 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 HHATLQ9HCP6 504 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 USE1Q9NZ43 259 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 PSMD13Q9UNM6 376 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 SAMD4AQ9UPU9 718 aaKnown RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 AP4S1Q9Y587 144 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 TTC3P53804 2025 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ARAP2Q8WZ64 1704 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 C17orf113A0A1B0GUU1 675 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 NPEPPSL1A6NEC2 478 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 AQP12BA6NM10 295 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 MYO1GB0I1T2 1018 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 EIF2S1P05198 315 aaKnown RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 PLIN5Q00G26 463 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 STX4Q12846 297 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 TRIM25Q14258 630 aaKnown RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 SPATS1Q496A3 300 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 MACC1Q6ZN28 852 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 ARHGAP36Q6ZRI8 547 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 DPPA4Q7L190 304 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 STK32CQ86UX6 486 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 AQP12AQ8IXF9 295 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms