RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 TWSG1Q9GZX9 223 aa15.35■□□□□ 0.05
CLN3-201ENST00000333496 FBXO6Q9NRD1 293 aaPredicted RBP15.35■□□□□ 0.05
CLN3-201ENST00000333496 LATS2Q9NRM7 1088 aa15.35■□□□□ 0.05
CLN3-201ENST00000333496 POLG2Q9UHN1 485 aa15.35■□□□□ 0.05
CLN3-201ENST00000333496 PILRAQ9UKJ1 303 aa15.35■□□□□ 0.05
CLN3-201ENST00000333496 PLAGL1Q9UM63 463 aa15.35■□□□□ 0.05
CLN3-201ENST00000333496 TDRKHQ9Y2W6 561 aaKnown RBP15.35■□□□□ 0.05
CLN3-201ENST00000333496 MED16Q9Y2X0 877 aa15.35■□□□□ 0.05
CLN3-201ENST00000333496 PFDN6O15212 129 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 RAD51CO43502 376 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 PKMP14618 531 aaKnown RBP15.34■□□□□ 0.05
CLN3-201ENST00000333496 FOLR1P15328 257 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 TMPRSS3P57727 454 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 CXADRP78310 365 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 PRKAA1Q13131 559 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 GRB7Q14451 532 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 HP1BP3Q5SSJ5 553 aaPredicted RBP15.34■□□□□ 0.05
CLN3-201ENST00000333496 PLEKHS1Q5SXH7 462 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 BROXQ5VW32 411 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 ZNF549Q6P9A3 640 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 KCNMB4Q86W47 210 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 KMT5CQ86Y97 462 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 SPNS2Q8IVW8 549 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 LMNTD2Q8IXW0 634 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 D2HGDHQ8N465 521 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 CEP112Q8N8E3 955 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 LRRN4CLQ8ND94 238 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 CFAP61Q8NHU2 1237 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 RNF31Q96EP0 1072 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 ZPBPQ9BS86 351 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 MENTQ9BUN1 341 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 SNX24Q9Y343 169 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 TMEM184BQ9Y519 407 aaPredicted RBP15.34■□□□□ 0.05
CLN3-201ENST00000333496 NFS1Q9Y697 457 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 TEX264Q9Y6I9 313 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 ANKRD12Q6UB98 2062 aa15.34■□□□□ 0.05
CLN3-201ENST00000333496 SMG1Q96Q15 3661 aaKnown RBP15.33■□□□□ 0.05
CLN3-201ENST00000333496 GSAPA4D1B5 854 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 H3BMM5 538 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 SMAPO00193 183 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 KPNA5O15131 536 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 HAUS5O94927 633 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 ERVK-10P10266 1014 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 ZNF28P17035 718 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 ELK3P41970 407 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 UCNP55089 124 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 TUBB4BP68371 445 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 MPP1Q00013 466 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 GABPB1Q06547 395 aaPredicted RBP15.33■□□□□ 0.04
CLN3-201ENST00000333496 TMED2Q15363 201 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 UNC5DQ6UXZ4 953 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 TIPARPQ7Z3E1 657 aaKnown RBP15.33■□□□□ 0.04
CLN3-201ENST00000333496 VASH2Q86V25 355 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 PDIK1LQ8N165 341 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 CARFQ8N187 725 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 SIDT2Q8NBJ9 832 aaKnown RBP15.33■□□□□ 0.04
CLN3-201ENST00000333496 FLVCR1-AS1Q8TAF5 88 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 CALML6Q8TD86 181 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 CCNL2Q96S94 520 aaPredicted RBP15.33■□□□□ 0.04
CLN3-201ENST00000333496 SLC30A3Q99726 388 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 NAT9Q9BTE0 207 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 C1GALT1Q9NS00 363 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 IARS2Q9NSE4 1012 aaKnown RBP15.33■□□□□ 0.04
CLN3-201ENST00000333496 ACTR10Q9NZ32 417 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 FBXO5Q9UKT4 447 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 RUVBL2Q9Y230 463 aaKnown RBP15.33■□□□□ 0.04
CLN3-201ENST00000333496 VPS9D1Q9Y2B5 631 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 PCDHB11Q9Y5F2 797 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 FAM208BQ5VWN6 2430 aa15.33■□□□□ 0.04
CLN3-201ENST00000333496 TEX51A0A1B0GUA7 166 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 SLC9B1P1A6NJY1 282 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 MATN2O00339 956 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 STK17BO94768 372 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 ZBTB11O95625 1053 aaPredicted RBP15.32■□□□□ 0.04
CLN3-201ENST00000333496 TTC4O95801 387 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 EBLN1P0CF75 366 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 FGF5P12034 268 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 WT1P19544 449 aaPredicted RBP15.32■□□□□ 0.04
CLN3-201ENST00000333496 CHRM3P20309 590 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 CDH3P22223 829 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 SHMT2P34897 504 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 CLCN7P51798 805 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 HSD11B2P80365 405 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 CKAP4Q07065 602 aaKnown RBP15.32■□□□□ 0.04
CLN3-201ENST00000333496 IL11RAQ14626 422 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 HIF1AQ16665 826 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 SPANXN3Q5MJ09 141 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 ARHGAP40Q5TG30 622 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 CNSTQ6PJW8 725 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 ZNF572Q7Z3I7 529 aaPredicted RBP15.32■□□□□ 0.04
CLN3-201ENST00000333496 LMNTD1Q8N9Z9 388 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 SNRNP27Q8WVK2 155 aaKnown RBP15.32■□□□□ 0.04
CLN3-201ENST00000333496 ERP44Q9BS26 406 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 PITPNM3Q9BZ71 974 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 WDR70Q9NW82 654 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 SPHK1Q9NYA1 384 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 FAM53CQ9NYF3 392 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 CIDEBQ9UHD4 219 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 CHMP2BQ9UQN3 213 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 BTRCQ9Y297 605 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms