RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 CBSLP0DN79 551 aa15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 ENO3P13929 434 aaPredicted RBP15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 HGFP14210 728 aa15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 SHMT2P34897 504 aa15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 CBSP35520 551 aa15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 GP5P40197 560 aa15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 PRKAA1Q13131 559 aa15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 NAB1Q13506 487 aa15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 SLMAPQ14BN4 828 aa15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 PAQR3Q6TCH7 311 aa15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 NEK10Q6ZWH5 1172 aa15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 RBBP8Q99708 897 aa15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 RAB33BQ9H082 229 aa15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 AKAP7Q9P0M2 348 aaPredicted RBP15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 PDP2Q9P2J9 529 aa15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 EPHA6Q9UF33 1036 aa15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 AK5Q9Y6K8 562 aa15.43■□□□□ 0.06
CCDC28A-201ENST00000332797 BTN3A3O00478 584 aa15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 HGSO14964 777 aaPredicted RBP15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 KIF1CO43896 1103 aaKnown RBP15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 MATN4O95460 622 aa15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 C1orf105O95561 183 aa15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 TPBGLP0DKB5 382 aa15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 MPC1LP0DKB6 136 aa15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 CD9P21926 228 aa15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 CSTF2P33240 577 aaKnown RBP eCLIP15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 CCNFP41002 786 aa15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 RGS4P49798 205 aa15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 EIF3IQ13347 325 aaKnown RBP15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 PIWIL4Q7Z3Z4 852 aaKnown RBP15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 FBXO39Q8N4B4 442 aa15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 EEF1AKMT1Q8WVE0 214 aa15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 MRRFQ96E11 262 aaKnown RBP15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 CMKLR1Q99788 373 aa15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 MCMBPQ9BTE3 642 aa15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 POLR1BQ9H9Y6 1135 aa15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 MTO1Q9Y2Z2 717 aaKnown RBP15.42■□□□□ 0.06
CCDC28A-201ENST00000332797 KRT87PA6NCN2 255 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 ARHGEF33A8MVX0 844 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 C1QTNF9BB2RNN3 333 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 EIF3FO00303 357 aaPredicted RBP15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 PLD2O14939 933 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 PSIP1O75475 530 aaKnown RBP15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 FAM155BO75949 473 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 FAM153BP0C7A2 387 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 C1QTNF9P0C862 333 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 JMJD7P0C870 316 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 PKLRP30613 574 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 LSSP48449 732 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 SLC12A2P55011 1212 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 ILF2Q12905 390 aaKnown RBP15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 GRB7Q14451 532 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 ZNF460Q14592 562 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 RTP5Q14D33 572 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 FAM153CQ494X1 144 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 CCSMST1Q4G0I0 132 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 GRTP1Q5TC63 336 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 CACHD1Q5VU97 1274 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 LRRC8EQ6NSJ5 796 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 UNQ6494/PRO21346Q6UXR6 183 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 ARHGAP22Q7Z5H3 698 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 ADGRF3Q8IZF5 1079 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 MYO1HQ8N1T3 1032 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 MAGEC3Q8TD91 643 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 RAD51AP1Q96B01 352 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 LINGO1Q96FE5 620 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 IL17FQ96PD4 163 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 CYTH2Q99418 400 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 TMEM121BQ9BXQ6 578 aaPredicted RBP15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 ANKZF1Q9H8Y5 726 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 PISDQ9UG56 409 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 SLC39A10Q9ULF5 831 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 FRYQ5TBA9 3013 aa15.41■□□□□ 0.06
CCDC28A-201ENST00000332797 MATN2O00339 956 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 RASGRF2O14827 1237 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 BRINP1O60477 761 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 CATP04040 527 aaKnown RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 CHRM5P08912 532 aaPredicted RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 ANKRD34CP0C6C1 535 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 MYBL2P10244 700 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 SPRP35270 261 aaPredicted RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 SEPHS1P49903 392 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 RAB28P51157 221 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 KPNA2P52292 529 aaKnown RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 TAS2R39P59534 338 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 IL2P60568 153 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 UAP1Q16222 522 aaPredicted RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 EEF1AKMT2Q5JPI9 291 aaKnown RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 CYHR1Q6ZMK1 362 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 PRSS42Q7Z5A4 293 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 FAM129CQ86XR2 697 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 LMNTD1Q8N9Z9 388 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 AGBL5Q8NDL9 886 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 UHMK1Q8TAS1 419 aaKnown RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 MDM1Q8TC05 714 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 MAP3K3Q99759 626 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 ACSS3Q9H6R3 686 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 CAB39LQ9H9S4 337 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 ACTR10Q9NZ32 417 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 OR6C2Q9NZP2 312 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms