RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 PIGZQ86VD9 579 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 PHF13Q86YI8 300 aaPredicted RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 TMEM139Q8IV31 216 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 CENPSQ8N2Z9 138 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 TSEN15Q8WW01 171 aaKnown RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 SEC14L1Q92503 715 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 FCGR1BQ92637 280 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 GAL3ST3Q96A11 431 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 S100PBPQ96BU1 408 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 C12orf43Q96C57 262 aaKnown RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 KLHL5Q96PQ7 755 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 ZNF670Q9BS34 389 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 NTPCRQ9BSD7 190 aaKnown RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 ZSCAN5AQ9BUG6 496 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 ZNF350Q9GZX5 532 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 ZNF304Q9HCX3 659 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 TAS2R1Q9NYW7 299 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 NDOR1Q9UHB4 597 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 C9JVG2 144 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 WRBO00258 174 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 CLDN11O75508 207 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 GSTT2BP0CG30 244 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 CES1P23141 567 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 TNFSF9P41273 254 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 YAP1P46937 504 aaKnown RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 TIGD6Q17RP2 521 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 SETMARQ53H47 684 aaPredicted RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 CLEC6AQ6EIG7 209 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 KLHL35Q6PF15 583 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 CHST15Q7LFX5 561 aaPredicted RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 CHST4Q8NCG5 386 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 NEK7Q8TDX7 302 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 ZNF431Q8TF32 576 aaPredicted RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 FATE1Q969F0 183 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 TRIM43Q96BQ3 446 aaPredicted RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 RTP3Q9BQQ7 232 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 RNF19AQ9NV58 838 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 LGALS13Q9UHV8 139 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 ZNF490Q9ULM2 529 aaPredicted RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 hCG_2039718K7EN88 272 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 RNF225M0QZC1 329 aaPredicted RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 M0R036 132 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 IPO13O94829 963 aaKnown RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 EPHX1P07099 455 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 UROSP10746 265 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 SKP1P63208 163 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 SLC18A2Q05940 514 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 FASTKD3Q14CZ7 662 aaKnown RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 PITRM1Q5JRX3 1037 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 RBM48Q5RL73 367 aaKnown RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 CPTPQ5TA50 214 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 PAOXQ6QHF9 649 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 ZYG11AQ6WRX3 759 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 ZNF567Q8N184 647 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 ZNF781Q8N8C0 355 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 PMM1Q92871 262 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 GTPBP3Q969Y2 492 aaKnown RBP8.05□□□□□ -1.12
VPS41-202ENST00000310301 FEM1CQ96JP0 617 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 KCNN2Q9H2S1 579 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 SEMA3GQ9NS98 782 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 IKZF2Q9UKS7 526 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 CPQQ9Y646 472 aa8.05□□□□□ -1.12
VPS41-202ENST00000310301 ARPC4-TTLL3A0A0A6YYG9 625 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 H3BQ06 376 aaPredicted RBP8.04□□□□□ -1.12
VPS41-202ENST00000310301 H7C2Y5 167 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 AKAP8O43823 692 aaKnown RBP8.04□□□□□ -1.12
VPS41-202ENST00000310301 SLC25A12O75746 678 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 ADRB2P07550 413 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 CXCR2P25025 360 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 ASB18Q6ZVZ8 466 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 ZFAND2BQ8WV99 257 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 AUTS2Q8WXX7 1259 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 UFD1Q92890 307 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 RNF31Q96EP0 1072 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 TSSK3Q96PN8 268 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 MGME1Q9BQP7 344 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 TMEM109Q9BVC6 243 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 RHOJQ9H4E5 214 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 POLR3BQ9NW08 1133 aaPredicted RBP8.04□□□□□ -1.12
VPS41-202ENST00000310301 TRBC1P01850 177 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 ARL13AQ5H913 290 aaPredicted RBP8.04□□□□□ -1.12
VPS41-202ENST00000310301 RAB12Q6IQ22 244 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 FAM92BQ6ZTR7 304 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 ARMC10Q8N2F6 343 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 DNAJA4Q8WW22 397 aaPredicted RBP8.04□□□□□ -1.12
VPS41-202ENST00000310301 HDAC10Q969S8 669 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 ROPN1LQ96C74 230 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 CLCC1Q96S66 551 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 GOLGA2P5Q9HBQ8 144 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 TDP1Q9NUW8 608 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 PTPRJQ12913 1337 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 ACOX3O15254 700 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 ERAL1O75616 437 aaKnown RBP8.04□□□□□ -1.12
VPS41-202ENST00000310301 POU2F1P14859 743 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 MAB21L1Q13394 359 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 BMT2Q1RMZ1 405 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 PLEKHG6Q3KR16 790 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 ZACNQ401N2 412 aa8.04□□□□□ -1.12
VPS41-202ENST00000310301 TMEM240Q5SV17 173 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms