RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 CRY1Q16526 586 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 CRTC3Q6UUV7 619 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 CCDC81Q6ZN84 652 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 IGFN1Q86VF2 1251 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 CHDHQ8NE62 594 aaPredicted RBP9.86□□□□□ -0.83
LIG3-201ENST00000262327 ANKK1Q8NFD2 765 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 WBP2Q969T9 261 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 SLC47A1Q96FL8 570 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 MBOAT4Q96T53 435 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 NUSAP1Q9BXS6 441 aaKnown RBP9.86□□□□□ -0.83
LIG3-201ENST00000262327 TM6SF2Q9BZW4 377 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 TMEM39AQ9NV64 488 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 PAK1IP1Q9NWT1 392 aaPredicted RBP9.86□□□□□ -0.83
LIG3-201ENST00000262327 ELOVL2Q9NXB9 296 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 SLC25A37Q9NYZ2 338 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 AFF4Q9UHB7 1163 aaKnown RBP9.86□□□□□ -0.83
LIG3-201ENST00000262327 PRELID1Q9Y255 219 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 ANKRD66B4E2M5 251 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 ZNF701M0R085 212 aaPredicted RBP9.85□□□□□ -0.83
LIG3-201ENST00000262327 ABCB7O75027 752 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 SEC22BO75396 215 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 PRSS23O95084 383 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 LRATO95237 230 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 EPOP01588 193 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 FTH1P02794 183 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 RPL17P18621 184 aaKnown RBP9.85□□□□□ -0.83
LIG3-201ENST00000262327 FMO3P31513 532 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 IDUAP35475 653 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 MAP2K4P45985 399 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 VAC14Q08AM6 782 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 FOXD4Q12950 439 aaPredicted RBP9.85□□□□□ -0.83
LIG3-201ENST00000262327 NFE2Q16621 373 aaPredicted RBP9.85□□□□□ -0.83
LIG3-201ENST00000262327 MAPKAPK3Q16644 382 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 MOGQ16653 247 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 PHKG1Q16816 387 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 C6orf141Q5SZD1 244 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 LAIR2Q6ISS4 152 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 DET1Q7L5Y6 550 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 NECAB2Q7Z6G3 386 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 LIX1Q8N485 282 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 GOLM1Q8NBJ4 401 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 SLC13A3Q8WWT9 602 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 EID2BQ96D98 161 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 FAM193BQ96PV7 902 aaPredicted RBP9.85□□□□□ -0.83
LIG3-201ENST00000262327 MGME1Q9BQP7 344 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 CIPCQ9C0C6 399 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 LRFN2Q9ULH4 789 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 PDE10AQ9Y233 779 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 ATP11BQ9Y2G3 1177 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 ANGPTL3Q9Y5C1 460 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 ANKRD28O15084 1053 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 BCAS1O75363 584 aaPredicted RBP9.85□□□□□ -0.83
LIG3-201ENST00000262327 SEC14L2O76054 403 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 CPNE6O95741 557 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 EFNA1P20827 205 aaPredicted RBP9.85□□□□□ -0.83
LIG3-201ENST00000262327 ENDOUP21128 410 aaKnown RBP9.85□□□□□ -0.83
LIG3-201ENST00000262327 TTKP33981 857 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 TGFBR1P36897 503 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 GSSP48637 474 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 YBEYP58557 167 aaPredicted RBP9.85□□□□□ -0.83
LIG3-201ENST00000262327 IL5RAQ01344 420 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 CYP4F3Q08477 520 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 PWP1Q13610 501 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 DEPDC1Q5TB30 811 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 CNKSR3Q6P9H4 555 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 NPAS4Q8IUM7 802 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 MSRB3Q8IXL7 192 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 CRIPAKQ8N1N5 446 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 NACC2Q96BF6 587 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 PAWRQ96IZ0 340 aaKnown RBP9.85□□□□□ -0.83
LIG3-201ENST00000262327 C8orf48Q96LL4 319 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 CEP295NLQ96MC4 621 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 ZNF382Q96SR6 550 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 RAD21L1Q9H4I0 556 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 HPS4Q9NQG7 708 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 SMPD4Q9NXE4 827 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 FNIP2Q9P278 1114 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 BAG5Q9UL15 447 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 PSME2Q9UL46 239 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 FCF1Q9Y324 198 aaKnown RBP9.85□□□□□ -0.83
LIG3-201ENST00000262327 PRSS21Q9Y6M0 314 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 PATJQ8NI35 1801 aa9.85□□□□□ -0.83
LIG3-201ENST00000262327 TYW5A2RUC4 315 aaKnown RBP9.84□□□□□ -0.83
LIG3-201ENST00000262327 H0YAE9 185 aa9.84□□□□□ -0.83
LIG3-201ENST00000262327 FFAR2O15552 330 aa9.84□□□□□ -0.83
LIG3-201ENST00000262327 TBC1D4O60343 1298 aa9.84□□□□□ -0.83
LIG3-201ENST00000262327 RHOCP08134 193 aa9.84□□□□□ -0.83
LIG3-201ENST00000262327 HOXB8P17481 243 aaPredicted RBP9.84□□□□□ -0.83
LIG3-201ENST00000262327 CCL23P55773 120 aa9.84□□□□□ -0.83
LIG3-201ENST00000262327 RNF219Q5W0B1 726 aaPredicted RBP9.84□□□□□ -0.83
LIG3-201ENST00000262327 PTRHD1Q6GMV3 140 aaKnown RBP9.84□□□□□ -0.83
LIG3-201ENST00000262327 TXNDC11Q6PKC3 985 aa9.84□□□□□ -0.83
LIG3-201ENST00000262327 PRSS55Q6UWB4 352 aaPredicted RBP9.84□□□□□ -0.83
LIG3-201ENST00000262327 SUSD1Q6UWL2 747 aa9.84□□□□□ -0.83
LIG3-201ENST00000262327 COLGALT2Q8IYK4 626 aa9.84□□□□□ -0.83
LIG3-201ENST00000262327 ZNF555Q8NEP9 628 aa9.84□□□□□ -0.83
LIG3-201ENST00000262327 ABHD11Q8NFV4 315 aa9.84□□□□□ -0.83
LIG3-201ENST00000262327 NETO1Q8TDF5 533 aa9.84□□□□□ -0.83
LIG3-201ENST00000262327 TSPEARQ8WU66 669 aa9.84□□□□□ -0.83
LIG3-201ENST00000262327 GTF2H4Q92759 462 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms