RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 OR9A1PQ8NGU1 263 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 GFM2Q969S9 779 aaKnown RBP11.33□□□□□ -0.59
VPS4A-201ENST00000254950 ARRDC3Q96B67 414 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 NSMCE2Q96MF7 247 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 WDR92Q96MX6 357 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 PIF1Q9H611 641 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 INTS7Q9NVH2 962 aaKnown RBP11.33□□□□□ -0.59
VPS4A-201ENST00000254950 KLHL42Q9P2K6 505 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 GULP1Q9UBP9 304 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 FAM32AQ9Y421 112 aaKnown RBP11.33□□□□□ -0.59
VPS4A-201ENST00000254950 TNFP01375 233 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 EIF2S1P05198 315 aaKnown RBP11.33□□□□□ -0.6
VPS4A-201ENST00000254950 ASGR2P07307 311 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 PRPS2P11908 318 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 CCR10P46092 362 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 ACVR1Q04771 509 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 CHRNB3Q05901 458 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 ADAM15Q13444 863 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 LRRC36Q1X8D7 754 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 TMEM198Q66K66 360 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 EPGNQ6UW88 154 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 R3HCC1LQ7Z5L2 792 aaKnown RBP11.33□□□□□ -0.6
VPS4A-201ENST00000254950 DHFR2Q86XF0 187 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 RBM15BQ8NDT2 890 aaKnown RBP11.33□□□□□ -0.6
VPS4A-201ENST00000254950 ADAMTS19Q8TE59 1207 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 FUBP1Q96AE4 644 aaKnown RBP11.33□□□□□ -0.6
VPS4A-201ENST00000254950 OR2M4Q96R27 311 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 ZNF382Q96SR6 550 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 UBE2ZQ9H832 354 aaPredicted RBP11.33□□□□□ -0.6
VPS4A-201ENST00000254950 SPAG4Q9NPE6 437 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 CFAP20Q9Y6A4 193 aaKnown RBP11.33□□□□□ -0.6
VPS4A-201ENST00000254950 SHROOM3Q8TF72 1996 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 LOC730098B7Z3J9 87 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 SLC22A2O15244 555 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 NOL3O60936 208 aaKnown RBP11.33□□□□□ -0.6
VPS4A-201ENST00000254950 EBLN1P0CF75 366 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 ARNTP27540 789 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 ERVK-8P63133 956 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 HPCAP84074 193 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 KCNC3Q14003 757 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.33□□□□□ -0.6
VPS4A-201ENST00000254950 PTCRAQ6ISU1 281 aaPredicted RBP11.33□□□□□ -0.6
VPS4A-201ENST00000254950 SLC30A9Q6PML9 568 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 CYP2U1Q7Z449 544 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 THOC6Q86W42 341 aaKnown RBP11.33□□□□□ -0.6
VPS4A-201ENST00000254950 CPSF7Q8N684 471 aaKnown RBP11.33□□□□□ -0.6
VPS4A-201ENST00000254950 RERGQ96A58 199 aaPredicted RBP11.33□□□□□ -0.6
VPS4A-201ENST00000254950 OR52E6Q96RD3 313 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 SRMSQ9H3Y6 488 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 CDH22Q9UJ99 828 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 EPN2O95208 641 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 LRATO95237 230 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 MMP12P39900 470 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 SSR2P43308 183 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 ASMTP46597 345 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 TDGQ13569 410 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 CLHC1Q8NHS4 586 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 DNAJB14Q8TBM8 379 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 MZB1Q8WU39 189 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 PTERQ96BW5 349 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 NPAS2Q99743 824 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 GSDMCQ9BYG8 508 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 LMAN1LQ9HAT1 526 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 ENTPD4Q9Y227 616 aa11.33□□□□□ -0.6
VPS4A-201ENST00000254950 TRIOBPQ9H2D6 2365 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 SEMA4FO95754 770 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 TCF3P15923 654 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 ELF3P78545 371 aaPredicted RBP11.32□□□□□ -0.6
VPS4A-201ENST00000254950 USP39Q53GS9 565 aaKnown RBP11.32□□□□□ -0.6
VPS4A-201ENST00000254950 SRFBP1Q8NEF9 429 aaKnown RBP11.32□□□□□ -0.6
VPS4A-201ENST00000254950 KLHDC7BQ96G42 594 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 AKTIPQ9H8T0 292 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 SOHLH2Q9NX45 425 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 EMCNQ9ULC0 261 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 SNX8Q9Y5X2 465 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 GSC2O15499 205 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 SNNO75324 88 aaPredicted RBP11.32□□□□□ -0.6
VPS4A-201ENST00000254950 CD72P21854 359 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 OXTRP30559 389 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 POLR2JP52435 117 aaKnown RBP11.32□□□□□ -0.6
VPS4A-201ENST00000254950 KPNB1Q14974 876 aaKnown RBP11.32□□□□□ -0.6
VPS4A-201ENST00000254950 FRG2Q64ET8 278 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 ASTLQ6HA08 431 aaPredicted RBP11.32□□□□□ -0.6
VPS4A-201ENST00000254950 ZNF765Q7L2R6 523 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 SLC44A2Q8IWA5 706 aaPredicted RBP11.32□□□□□ -0.6
VPS4A-201ENST00000254950 LZICQ8WZA0 190 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 FRG2BQ96QU4 278 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 MTERF1Q99551 399 aaKnown RBP11.32□□□□□ -0.6
VPS4A-201ENST00000254950 PHF7Q9BWX1 381 aaPredicted RBP11.32□□□□□ -0.6
VPS4A-201ENST00000254950 GPR174Q9BXC1 333 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 SLC2A4RGQ9NR83 387 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 NEU3Q9UQ49 428 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 CENPFP49454 3210 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 PTSQ03393 145 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 SLBPQ14493 270 aaKnown RBP eCLIP11.32□□□□□ -0.6
VPS4A-201ENST00000254950 ZNF549Q6P9A3 640 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 EFCAB3Q8N7B9 438 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 ALG14Q96F25 216 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 MSANTD3Q96H12 275 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 NSUN5Q96P11 429 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms