RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 TIAL1Q01085 375 aaKnown RBP eCLIP11.73□□□□□ -0.53
USHBP1-201ENST00000252597 BOP1Q14137 746 aaKnown RBP11.73□□□□□ -0.53
USHBP1-201ENST00000252597 PON2Q15165 354 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 DPY19L1Q2PZI1 675 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 GON4LQ3T8J9 2241 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 PDE12Q6L8Q7 609 aaKnown RBP11.73□□□□□ -0.53
USHBP1-201ENST00000252597 SPATC1Q76KD6 591 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 C10orf111Q8N326 155 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 CEP19Q96LK0 163 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 KCNC2Q96PR1 638 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 ZNF347Q96SE7 839 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 TRIM62Q9BVG3 475 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 ELOVL6Q9H5J4 265 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 CEP290O15078 2479 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 FFAR2O15552 330 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 CREG1O75629 220 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 PRAMEF12O95522 483 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 BMP4P12644 408 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 GP2P55259 537 aaKnown RBP11.73□□□□□ -0.53
USHBP1-201ENST00000252597 IFITM3Q01628 133 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 PWP1Q13610 501 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 INAVAQ3KP66 663 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 CATSPEREQ5SY80 951 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 AFTPHQ6ULP2 937 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 CHPT1Q8WUD6 406 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 PPP1R2P1Q96PQ5 205 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 ATP13A3Q9H7F0 1226 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 ZBTB20Q9HC78 741 aaPredicted RBP11.73□□□□□ -0.53
USHBP1-201ENST00000252597 ARL15Q9NXU5 204 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 TRPV2Q9Y5S1 764 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 MROH6A6NGR9 719 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 RFXANKO14593 260 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 MTX2O75431 263 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 FAM163BP0C2L3 166 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 MSH3P20585 1137 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 ZNF135P52742 658 aaPredicted RBP11.73□□□□□ -0.53
USHBP1-201ENST00000252597 PHKG1Q16816 387 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 TRIM60Q495X7 471 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 OR4F3Q6IEY1 312 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 GLB1LQ6UWU2 654 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 HS6ST3Q8IZP7 471 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 LRTM1Q9HBL6 345 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 MRM3Q9HC36 420 aaKnown RBP11.73□□□□□ -0.53
USHBP1-201ENST00000252597 NEU3Q9UQ49 428 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 TESMINQ9Y4I5 508 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 PCDHB14Q9Y5E9 798 aa11.73□□□□□ -0.53
USHBP1-201ENST00000252597 A0A096LPI6 279 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 EVPLLA8MZ36 301 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 SEC14L2O76054 403 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 PEX11BO96011 259 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 CHRNA1P02708 482 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 HTR1AP08908 422 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 C21orf33P30042 268 aaPredicted RBP11.72□□□□□ -0.53
USHBP1-201ENST00000252597 CSRP3P50461 194 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 UBE3AQ05086 875 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 GALNT1Q10472 559 aaPredicted RBP11.72□□□□□ -0.53
USHBP1-201ENST00000252597 TRAF3Q13114 568 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 SERINC3Q13530 473 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 KCNJ8Q15842 424 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 ZNF648Q5T619 568 aaPredicted RBP11.72□□□□□ -0.53
USHBP1-201ENST00000252597 RNF219Q5W0B1 726 aaPredicted RBP11.72□□□□□ -0.53
USHBP1-201ENST00000252597 C8orf82Q6P1X6 216 aaPredicted RBP11.72□□□□□ -0.53
USHBP1-201ENST00000252597 DLEU7Q6UYE1 221 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 EFL1Q7Z2Z2 1120 aaKnown RBP11.72□□□□□ -0.53
USHBP1-201ENST00000252597 NECAB2Q7Z6G3 386 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 CYP4Z1Q86W10 505 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 TTC29Q8NA56 475 aaPredicted RBP11.72□□□□□ -0.53
USHBP1-201ENST00000252597 BTN2A3PQ96KV6 586 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 PANX1Q96RD7 426 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 KCNS3Q9BQ31 491 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 DERL2Q9GZP9 239 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 TLR9Q9NR96 1032 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 KRT84Q9NSB2 600 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 C14orf119Q9NWQ9 140 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 ABCG2Q9UNQ0 655 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.72□□□□□ -0.53
USHBP1-201ENST00000252597 EFCAB9A8MZ26 197 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 E2F3O00716 465 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 RAD51BO15315 384 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 RGS14O43566 566 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 PRSS23O95084 383 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 GGT1P19440 569 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 TACR2P21452 398 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 CCL23P55773 120 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 RHOAP61586 193 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 LRRC74AQ0VAA2 488 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 CDK5R2Q13319 367 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 ZNF177Q13360 481 aaPredicted RBP11.72□□□□□ -0.53
USHBP1-201ENST00000252597 TUSC3Q13454 348 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 SF3B4Q15427 424 aaKnown RBP eCLIP11.72□□□□□ -0.53
USHBP1-201ENST00000252597 RGMBQ6NW40 437 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 FAM180BQ6P0A1 224 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 DHRS4L2Q6PKH6 230 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 CEP68Q76N32 757 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 RGL4Q8IZJ4 473 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 GPR156Q8NFN8 814 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 KATNBL1Q9H079 304 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 PALMDQ9NP74 551 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 OGDHLQ9ULD0 1010 aa11.72□□□□□ -0.53
USHBP1-201ENST00000252597 CACNG3O60359 315 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms