RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PLGRKTQ9HBL7 147 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 CD84Q9UIB8 345 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 COMMD10Q9Y6G5 202 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 STX7O15400 261 aaKnown RBP10.46□□□□□ -0.73
USP28-201ENST00000003302 ACSL4O60488 711 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 GJA1P17302 382 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 CTSOP43234 321 aaPredicted RBP10.46□□□□□ -0.73
USP28-201ENST00000003302 VLDLRP98155 873 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 MAPRE1Q15691 268 aaKnown RBP10.46□□□□□ -0.73
USP28-201ENST00000003302 PGS1Q32NB8 556 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 EGFLAMQ63HQ2 1017 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 SERPINA9Q86WD7 417 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 ST13P5Q8NFI4 369 aaPredicted RBP10.46□□□□□ -0.73
USP28-201ENST00000003302 OR56A4Q8NGH8 313 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 ELMO1Q92556 727 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 UPF1Q92900 1129 aaKnown RBP eCLIP10.46□□□□□ -0.73
USP28-201ENST00000003302 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.46□□□□□ -0.732e-7■■■■■ 62.8
USP28-201ENST00000003302 APIPQ96GX9 242 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 ZNF382Q96SR6 550 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 SMG9Q9H0W8 520 aaKnown RBP10.46□□□□□ -0.73
USP28-201ENST00000003302 ACTR8Q9H981 624 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.46□□□□□ -0.73
USP28-201ENST00000003302 COQ6Q9Y2Z9 468 aa10.46□□□□□ -0.73
USP28-201ENST00000003302 TMEM88BA6NKF7 163 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 CDH1P12830 882 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 TYMPP19971 482 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 MRPL58Q14197 206 aaKnown RBP10.46□□□□□ -0.74
USP28-201ENST00000003302 TAF1AQ15573 450 aaPredicted RBP10.46□□□□□ -0.74
USP28-201ENST00000003302 UAP1L1Q3KQV9 507 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 ALG1LQ6GMV1 187 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 CCDC81Q6ZN84 652 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 DBF4BQ8NFT6 615 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 C1QTNF3Q9BXJ4 246 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 LHX3Q9UBR4 397 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 SUN2Q9UH99 717 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 DOCK9Q9BZ29 2069 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 CCNA2P20248 432 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 OXCT1P55809 520 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 B4GALNT1Q00973 533 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 CYP4F3Q08477 520 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 AFTPHQ6ULP2 937 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 CLECL1Q8IZS7 167 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 BEGAINQ9BUH8 593 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 FBXO44Q9H4M3 255 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 NMRK2Q9NPI5 230 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 HEBP1Q9NRV9 189 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 RNF186Q9NXI6 227 aa10.46□□□□□ -0.74
USP28-201ENST00000003302 SLC1A7O00341 560 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 VPS26AO75436 327 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 SERPINB7O75635 380 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 LCKP06239 509 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 TPP2P29144 1249 aaPredicted RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 RAD23AP54725 363 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 CBX2Q14781 532 aaPredicted RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 CRY1Q16526 586 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 PDCD4Q53EL6 469 aaKnown RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 PACRGLQ8N7B6 248 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 OR7A2PQ8NGA2 310 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 GTF3C2Q8WUA4 911 aaPredicted RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 TSPAN18Q96SJ8 248 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 NACA2Q9H009 215 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 KAT8Q9H7Z6 458 aaKnown RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 SYTL2Q9HCH5 934 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 TAS2R16Q9NYV7 291 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 ZNF490Q9ULM2 529 aaPredicted RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 TMEM202A6NGA9 273 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 SLC38A8A6NNN8 435 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 PRMT5O14744 637 aaPredicted RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 SEC22BO75396 215 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 ANXA6P08133 673 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 BCKDHAP12694 445 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 PRKAR2AP13861 404 aaKnown RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 GRK5P34947 590 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 OR1D2P34982 312 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 GZMMP51124 257 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 NUP107P57740 925 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 EEFSECP57772 596 aaKnown RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 CARNMT1Q8N4J0 409 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 FAR1Q8WVX9 515 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 NCLNQ969V3 563 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 EGFL8Q99944 293 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 MRPL40Q9NQ50 206 aaKnown RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 RIC8BQ9NVN3 520 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 CAB39Q9Y376 341 aaPredicted RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 ZBBXA8MT70 800 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 SULT1C4O75897 302 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 PDYNP01213 254 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 GBAP04062 536 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 ZDHHC11BP0C7U3 371 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 RAP2AP10114 183 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 HMGA1P17096 107 aaKnown RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 HOXA9P31269 272 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 CLK3P49761 638 aaKnown RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 CBX3Q13185 183 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 ARHGEF7Q14155 803 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 MAPKAPK3Q16644 382 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 C16orf87Q6PH81 154 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 CRTC3Q6UUV7 619 aa10.45□□□□□ -0.74
USP28-201ENST00000003302 DCP2Q8IU60 420 aaKnown RBP10.45□□□□□ -0.74
USP28-201ENST00000003302 ZDHHC13Q8IUH4 622 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms