RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-233	ENST00000642021	PFDN6	O15212	129 aa		13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	CBFA2T3	O75081	653 aa		13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	BCAS1	O75363	584 aa	Predicted RBP	13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	INMT	O95050	263 aa		13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	HPR	P00739	348 aa		13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	PGR	P06401	933 aa		13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	OCM2	P0CE71	109 aa		13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	OCM	P0CE72	109 aa	Predicted RBP	13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	PFKL	P17858	780 aa		13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	NR1D2	Q14995	579 aa		13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	PON2	Q15165	354 aa		13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	CCSAP	Q6IQ19	270 aa	Predicted RBP	13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	GCNT7	Q6ZNI0	430 aa		13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	SLC16A12	Q6ZSM3	486 aa		13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	FEM1A	Q9BSK4	669 aa		13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	APOL5	Q9BWW9	433 aa		13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	WARS2	Q9UGM6	360 aa	Known RBP	13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	SH3GLB1	Q9Y371	365 aa		13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	SLC30A1	Q9Y6M5	507 aa		13.56	□□□□□ -0.24
PHGDH-233	ENST00000642021	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	ILVBL	A1L0T0	632 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	OR6C75	A6NL08	312 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	SEPT4	O43236	478 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	MAN1A2	O60476	641 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	CLDN11	O75508	207 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	CLPX	O76031	633 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	ZNF12	P17014	697 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	DCT	P40126	519 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	SLC11A2	P49281	568 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	TPD52	P55327	224 aa	Predicted RBP	13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	FAM189B	P81408	668 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	ZNF177	Q13360	481 aa	Predicted RBP	13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	NCEH1	Q6PIU2	408 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	TRAF7	Q6Q0C0	670 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	FAM151B	Q6UXP7	276 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	ADAMTSL2	Q86TH1	951 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	NETO1	Q8TDF5	533 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	FAM162A	Q96A26	154 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	MTFMT	Q96DP5	389 aa	Known RBP	13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	PPP3R2	Q96LZ3	170 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	AASS	Q9UDR5	926 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	KL	Q9UEF7	1012 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	INVS	Q9Y283	1065 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	IFRD1	O00458	451 aa	Predicted RBP	13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	ADAM12	O43184	909 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	HS6ST1	O60243	411 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	E2F6	O75461	281 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	SULT1C4	O75897	302 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	RPLP2	P05387	115 aa	Known RBP	13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	CKB	P12277	381 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	CCND3	P30281	292 aa	Predicted RBP	13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	AKT1	P31749	480 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	CD97	P48960	835 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	KPNA1	P52294	538 aa	Predicted RBP	13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	ITGAD	Q13349	1161 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	RUNDC3A	Q59EK9	446 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	CXorf57	Q6NSI4	855 aa	Known RBP	13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	MBOAT1	Q6ZNC8	495 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	TMEM173	Q86WV6	379 aa	Predicted RBP	13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	RGL4	Q8IZJ4	473 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	TRUB1	Q8WWH5	349 aa	Known RBP	13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	SDCCAG3	Q96C92	435 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	BEGAIN	Q9BUH8	593 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	DPY30	Q9C005	99 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	13.55	□□□□□ -0.24	5e-8	■■□□□ 14.4
PHGDH-233	ENST00000642021	MARCH5	Q9NX47	278 aa		13.55	□□□□□ -0.24
PHGDH-233	ENST00000642021	LOC100130705	A0A1B0GUX0	176 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021		H0Y626	953 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	GAPDHS	O14556	408 aa	Predicted RBP	13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	COCH	O43405	550 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	XPNPEP2	O43895	674 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	TBC1D4	O60343	1298 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	TRIM16	O95361	564 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	C1QC	P02747	245 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	GSN	P06396	782 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	MZF1	P28698	734 aa	Predicted RBP	13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	RELA	Q04206	551 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	CACNG1	Q06432	222 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	LAPTM4A	Q15012	233 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	PTRHD1	Q6GMV3	140 aa	Known RBP	13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	CRTC3	Q6UUV7	619 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	PRSS55	Q6UWB4	352 aa	Predicted RBP	13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	SERPINA9	Q86WD7	417 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	CHPF	Q8IZ52	775 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	ZNF555	Q8NEP9	628 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	ABHD11	Q8NFV4	315 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	NRBF2	Q96F24	287 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	BARD1	Q99728	777 aa	Known RBP	13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	KAT8	Q9H7Z6	458 aa	Known RBP	13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	DCAF13	Q9NV06	445 aa	Known RBP	13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	TMEFF2	Q9UIK5	374 aa	Predicted RBP	13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	EIF3L	Q9Y262	564 aa	Known RBP	13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	FCF1	Q9Y324	198 aa	Known RBP	13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	PCDHB14	Q9Y5E9	798 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	SOBP	A7XYQ1	873 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	LOC730098	B7Z3J9	87 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	RAD51B	O15315	384 aa		13.54	□□□□□ -0.24
PHGDH-233	ENST00000642021	MITF	O75030	526 aa	Predicted RBP	13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 26 ms