RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-231	ENST00000641939	KRT222	Q8N1A0	295 aa		14.6	□□□□□ -0.07
PHGDH-231	ENST00000641939	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	14.6	□□□□□ -0.07
PHGDH-231	ENST00000641939	OR5K2	Q8NHB8	316 aa		14.6	□□□□□ -0.07
PHGDH-231	ENST00000641939	LKAAEAR1	Q8TD35	194 aa		14.6	□□□□□ -0.07
PHGDH-231	ENST00000641939	ZNF669	Q96BR6	464 aa	Predicted RBP	14.6	□□□□□ -0.07
PHGDH-231	ENST00000641939	PANX3	Q96QZ0	392 aa		14.6	□□□□□ -0.07
PHGDH-231	ENST00000641939	TCF12	Q99081	682 aa		14.6	□□□□□ -0.07
PHGDH-231	ENST00000641939	TRIT1	Q9H3H1	467 aa	Known RBP	14.6	□□□□□ -0.07
PHGDH-231	ENST00000641939	PDE7B	Q9NP56	450 aa		14.6	□□□□□ -0.07
PHGDH-231	ENST00000641939	ASIC3	Q9UHC3	531 aa		14.6	□□□□□ -0.07
PHGDH-231	ENST00000641939	POLG2	Q9UHN1	485 aa		14.6	□□□□□ -0.07
PHGDH-231	ENST00000641939	POMT2	Q9UKY4	750 aa		14.6	□□□□□ -0.07
PHGDH-231	ENST00000641939	CDYL	Q9Y232	598 aa		14.6	□□□□□ -0.07
PHGDH-231	ENST00000641939	GSAP	A4D1B5	854 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	BTN3A3	O00478	584 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	BTN3A1	O00481	513 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	KPNA5	O15131	536 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	DLGAP3	O95886	979 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	FGF5	P12034	268 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	FOLR1	P15328	257 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	OGN	P20774	298 aa	Known RBP	14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	EIF3B	P55884	814 aa	Known RBP	14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	ACY1	Q03154	408 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	TUBB3	Q13509	450 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	DHX34	Q14147	1143 aa	Known RBP	14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	KCNAB1	Q14722	419 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	DNAJC21	Q5F1R6	531 aa	Known RBP	14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	NEPRO	Q6NW34	567 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	TIPARP	Q7Z3E1	657 aa	Known RBP	14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	PCGF5	Q86SE9	256 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	TMEM135	Q86UB9	458 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	PPP1R3B	Q86XI6	285 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	RASGRP3	Q8IV61	690 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	VRK3	Q8IV63	474 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	D2HGDH	Q8N465	521 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	ZSCAN1	Q8NBB4	408 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	LPGAT1	Q92604	370 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	ELMO2	Q96JJ3	720 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	PPM1M	Q96MI6	270 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	RUNDC3B	Q96NL0	473 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	BIRC8	Q96P09	236 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	BBC3	Q96PG8	261 aa	Predicted RBP	14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	NRTN	Q99748	197 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	TRIM56	Q9BRZ2	755 aa	Known RBP	14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	ULBP3	Q9BZM4	244 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	XKR8	Q9H6D3	395 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	C1GALT1	Q9NS00	363 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	ICK	Q9UPZ9	632 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	TDRKH	Q9Y2W6	561 aa	Known RBP	14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	PCDHGA4	Q9Y5G9	962 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	RPS6KL1	Q9Y6S9	549 aa		14.59	□□□□□ -0.07
PHGDH-231	ENST00000641939	COL6A6	A6NMZ7	2263 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	PCM1	Q15154	2024 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	ERVH48-1	M5A8F1	160 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	DNALI1	O14645	258 aa	Predicted RBP	14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	ATXN7	O15265	892 aa	Predicted RBP	14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	KALRN	O60229	2985 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	KDM1A	O60341	852 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	SLCO2B1	O94956	709 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	EBLN1	P0CF75	366 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	CDH3	P22223	829 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	PRDX3	P30048	256 aa	Known RBP	14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	FMO4	P31512	558 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	SHMT2	P34897	504 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	PTGIR	P43119	386 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	ABHD18	Q0P651	414 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	MAP7	Q14244	749 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	CTSL3P	Q5NE16	218 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	KIAA1614	Q5VZ46	1190 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	SYDE1	Q6ZW31	735 aa	Predicted RBP	14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	CILP2	Q8IUL8	1156 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	KLHL7	Q8IXQ5	586 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	ADGRF3	Q8IZF5	1079 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	ESX1	Q8N693	406 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	SIGLEC10	Q96LC7	697 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	IL1RAPL1	Q9NZN1	696 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	RARRES3	Q9UL19	164 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	BTRC	Q9Y297	605 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	VPS9D1	Q9Y2B5	631 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	MAD1L1	Q9Y6D9	718 aa		14.58	□□□□□ -0.08
PHGDH-231	ENST00000641939	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	14.58	□□□□□ -0.08	2e-7	■□□□□ 10.4
PHGDH-231	ENST00000641939	SLC9B1P1	A6NJY1	282 aa		14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	C2orf74	A8MZ97	194 aa		14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939		H3BMM5	538 aa		14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	SPAG6	O75602	509 aa		14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	USP1	O94782	785 aa		14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	KIAA0754	O94854	1291 aa		14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	ESR1	P03372	595 aa		14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	RPN2	P04844	631 aa		14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	LIF	P15018	202 aa		14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	ZNF28	P17035	718 aa		14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	WT1	P19544	449 aa	Predicted RBP	14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	PAFAH1B1	P43034	410 aa		14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	ADAR	P55265	1226 aa	Known RBP	14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	TUBB4B	P68371	445 aa		14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	ABR	Q12979	859 aa		14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	THOC5	Q13769	683 aa	Known RBP	14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	TUBB2A	Q13885	445 aa		14.57	□□□□□ -0.08
PHGDH-231	ENST00000641939	TMTC4	Q5T4D3	741 aa		14.57	□□□□□ -0.08

Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms