RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 REPS2Q8NFH8 660 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 OR2T11Q8NH01 316 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 BPIFB1Q8TDL5 484 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 METTL8Q9H825 291 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CRYL1Q9Y2S2 319 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 DERAQ9Y315 318 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 PXDNQ92626 1479 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TCRBV5S4A2TA0A5A2 114 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 IMPA2O14732 288 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 OR10H3O60404 316 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 JCHAINP01591 159 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ICAM1P05362 532 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ERVK-10P10266 1014 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ITGAMP11215 1152 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 GSK3BP49841 420 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 DDX39BQ13838 428 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SCARF1Q14162 830 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 PGBD2Q6P3X8 592 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CEP97Q8IW35 865 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SLC44A3Q8N4M1 653 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 FAM46DQ8NEK8 389 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SNAPC3Q92966 411 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 NPLQ9BXD5 320 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ATXN3LQ9H3M9 355 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 LRTM1Q9HBL6 345 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SEMA3GQ9NS98 782 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 HBP1O60381 514 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 PDGFAP04085 211 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 GLUD2P49448 558 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 OCLNQ16625 522 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 PFKFB4Q16877 469 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 HSDL1Q3SXM5 330 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 DCST1Q5T197 706 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF621Q6ZSS3 439 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 PHACTR4Q8IZ21 702 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 UXS1Q8NBZ7 420 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 NDNFQ8TB73 568 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 AZIN2Q96A70 460 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 SEPT5Q99719 369 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 SNTG1Q9NSN8 517 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 THG1LQ9NWX6 298 aaKnown RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF282Q9UDV7 671 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 RIIAD1A6NNX1 92 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 H0Y858 1186 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 MPSTP25325 297 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 SLC11A2P49281 568 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 AFF1P51825 1210 aaKnown RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 RBBP4Q09028 425 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 FUT2Q10981 343 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 TARDBPQ13148 414 aaKnown RBP eCLIP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 HEPACAMQ14CZ8 416 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 SUPT20HL1Q3ZLR7 823 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 PTAR1Q7Z6K3 402 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 SMAP2Q8WU79 429 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 TMEM80Q96HE8 168 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 MYRFLQ96LU7 910 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 NECAB3Q96P71 396 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 FANCFQ9NPI8 374 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 RBM22Q9NW64 420 aaKnown RBP eCLIP4.59□□□□□ -1.671e-6■■■■■ 27.8
SCN1A-220ENST00000641603 CCNL1Q9UK58 526 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 H0YIN7 160 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 UBA1P22314 1058 aaKnown RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 AXLP30530 894 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 EN1Q05925 392 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 GK2Q14410 553 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 APOBEC3FQ8IUX4 373 aaKnown RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 OR1J4Q8NGS1 313 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 RNF146Q9NTX7 359 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 NDRG3Q9UGV2 375 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 MRPS7Q9Y2R9 242 aaKnown RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 GLYATL1P3A0A0U1RQE8 302 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 XPNPEP2O43895 674 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 ADH6P28332 368 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 CDH5P33151 784 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 EIF2S3LQ2VIR3 472 aaKnown RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 UGT3A2Q3SY77 523 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 ZACNQ401N2 412 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 PIGXQ8TBF5 258 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 GIMAP5Q96F15 307 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 ALPK1Q96QP1 1244 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 FTHL17Q9BXU8 183 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 DUSP16Q9BY84 665 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 AP5M1Q9H0R1 490 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 TOR3AQ9H497 397 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 CNOT2Q9NZN8 540 aaKnown RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 RNF225M0QZC1 329 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 LYRM1O43325 122 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 GKP32189 559 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 GPC1P35052 558 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 OPRL1P41146 370 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 PGM2L1Q6PCE3 622 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 SPATA2LQ8IUW3 424 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 METTL4Q8N3J2 472 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 MARCH10Q8NA82 808 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 OR13F1Q8NGS4 319 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 SLC2A14Q8TDB8 520 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 SERAC1Q96JX3 654 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 COQ10AQ96MF6 247 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 TRAF4Q9BUZ4 470 aaPredicted RBP4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms