RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 CCL22O00626 93 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 KLF7O75840 302 aaPredicted RBP14.52□□□□□ -0.09
SYNE2-228ENST00000639659 IPO13O94829 963 aaKnown RBP14.52□□□□□ -0.09
SYNE2-228ENST00000639659 EPOP01588 193 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 PYGMP11217 842 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 NR2C2P49116 596 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 PRLHRP49683 370 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 OLIG2Q13516 323 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 SSPNQ14714 243 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 HIF1AQ16665 826 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 SARM1Q6SZW1 724 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 VSIG1Q86XK7 387 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 TICAM1Q8IUC6 712 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 CCDC50Q8IVM0 306 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 ZNF655Q8N720 491 aaPredicted RBP14.52□□□□□ -0.09
SYNE2-228ENST00000639659 C19orf47Q8N9M1 422 aaKnown RBP14.52□□□□□ -0.09
SYNE2-228ENST00000639659 OR13C4Q8NGS5 318 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 P3H4Q92791 437 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 MARVELD3Q96A59 401 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 IQCDQ96DY2 449 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 C17orf62Q9BQA9 187 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 PITPNM3Q9BZ71 974 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 ZNF552Q9H707 407 aaPredicted RBP14.52□□□□□ -0.09
SYNE2-228ENST00000639659 C10orf88Q9H8K7 445 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 IFNKQ9P0W0 207 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 CSAG2Q9Y5P2 127 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 FER1L5A0AVI2 2057 aa14.52□□□□□ -0.09
SYNE2-228ENST00000639659 LRRTM2O43300 516 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 SGTAO43765 313 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 KLHL41O60662 606 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 IGHEP01854 428 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 ITGALP20701 1170 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 ANP32AP39687 249 aaKnown RBP14.51□□□□□ -0.09
SYNE2-228ENST00000639659 HADHAP40939 763 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 CDKN2BP42772 138 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 DCDP81605 110 aaKnown RBP14.51□□□□□ -0.09
SYNE2-228ENST00000639659 TAF1AQ15573 450 aaPredicted RBP14.51□□□□□ -0.09
SYNE2-228ENST00000639659 ZNF385CQ66K41 422 aaPredicted RBP14.51□□□□□ -0.09
SYNE2-228ENST00000639659 ZNF449Q6P9G9 518 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 SPESP1Q6UW49 350 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 MICALCLQ6ZW33 695 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 TMEM151BQ8IW70 566 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 ULK4Q96C45 1275 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 LINC00615Q96LM1 132 aaPredicted RBP14.51□□□□□ -0.09
SYNE2-228ENST00000639659 GBP5Q96PP8 586 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 COPS8Q99627 209 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 FAM60AQ9NP50 221 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 SPTLC3Q9NUV7 552 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 TDRKHQ9Y2W6 561 aaKnown RBP14.51□□□□□ -0.09
SYNE2-228ENST00000639659 PCDHGA10Q9Y5H3 936 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 SEC16AO15027 2179 aa14.51□□□□□ -0.09
SYNE2-228ENST00000639659 ABCA12Q86UK0 2595 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 MACROD2A1Z1Q3 448 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 GOLGA6L19H0YKK7 550 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 H7C0C1 242 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 ZSCAN9O15535 394 aaPredicted RBP14.5□□□□□ -0.09
SYNE2-228ENST00000639659 HCRTR1O43613 425 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 CTSBP07858 339 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 ATP1B2P14415 290 aaPredicted RBP14.5□□□□□ -0.09
SYNE2-228ENST00000639659 UGT2B7P16662 529 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 COMTP21964 271 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 PDHA2P29803 388 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 ARHGAP25P42331 645 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 ATP5OP48047 213 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 GEMP55040 296 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 PER3P56645 1201 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 BRD3Q15059 726 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 IRAK1BP1Q5VVH5 260 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 PPP1R32Q7Z5V6 425 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 ADGRF3Q8IZF5 1079 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 NXPE1Q8N323 547 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 ST6GALNAC3Q8NDV1 305 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 OR2Y1Q8NGV0 311 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 QKIQ96PU8 341 aaKnown RBP eCLIP14.5□□□□□ -0.09
SYNE2-228ENST00000639659 WDR77Q9BQA1 342 aaPredicted RBP14.5□□□□□ -0.09
SYNE2-228ENST00000639659 OR52A5Q9H2C5 316 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 TFB2MQ9H5Q4 396 aaKnown RBP14.5□□□□□ -0.09
SYNE2-228ENST00000639659 MVB12BQ9H7P6 319 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 ATP13A2Q9NQ11 1180 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 NOVA2Q9UNW9 492 aaKnown RBP14.5□□□□□ -0.09
SYNE2-228ENST00000639659 AP1M2Q9Y6Q5 423 aa14.5□□□□□ -0.09
SYNE2-228ENST00000639659 DIDO1Q9BTC0 2240 aaKnown RBP14.5□□□□□ -0.09
SYNE2-228ENST00000639659 ZG16O60844 167 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 CNOT3O75175 753 aaKnown RBP14.49□□□□□ -0.09
SYNE2-228ENST00000639659 MSL3P1P0C860 447 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 ALAS2P22557 587 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 CDC16Q13042 620 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 CCDC181Q5TID7 509 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 LRRC38Q5VT99 294 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 RHBDD2Q6NTF9 364 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 Q6ZS92 163 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 TAS2R42Q7RTR8 314 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 RHOT2Q8IXI1 618 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 OR5AR1Q8NGP9 310 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 PROKR1Q8TCW9 393 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 TFGQ92734 400 aaPredicted RBP14.49□□□□□ -0.09
SYNE2-228ENST00000639659 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.49□□□□□ -0.09
SYNE2-228ENST00000639659 PTERQ96BW5 349 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 MOCOSQ96EN8 888 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 VAT1Q99536 393 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms