RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 UGT1A4P22310 534 aa14□□□□□ -0.17
CLN3-249ENST00000636685 NDUFS1P28331 727 aa14□□□□□ -0.17
CLN3-249ENST00000636685 GABRA4P48169 554 aa14□□□□□ -0.17
CLN3-249ENST00000636685 LTBQ06643 244 aa14□□□□□ -0.17
CLN3-249ENST00000636685 FOXD4Q12950 439 aaPredicted RBP14□□□□□ -0.17
CLN3-249ENST00000636685 GSE1Q14687 1217 aa14□□□□□ -0.17
CLN3-249ENST00000636685 ZIC1Q15915 447 aa14□□□□□ -0.17
CLN3-249ENST00000636685 TXNRD3NBQ6F5E7 133 aa14□□□□□ -0.17
CLN3-249ENST00000636685 TIGD7Q6NT04 549 aaPredicted RBP14□□□□□ -0.17
CLN3-249ENST00000636685 TRIM73Q86UV7 250 aa14□□□□□ -0.17
CLN3-249ENST00000636685 OR11G2Q8NGC1 345 aa14□□□□□ -0.17
CLN3-249ENST00000636685 NAT14Q8WUY8 206 aa14□□□□□ -0.17
CLN3-249ENST00000636685 TRIB3Q96RU7 358 aa14□□□□□ -0.17
CLN3-249ENST00000636685 FOXC2Q99958 501 aa14□□□□□ -0.17
CLN3-249ENST00000636685 UGT1A7Q9HAW7 530 aa14□□□□□ -0.17
CLN3-249ENST00000636685 UGT1A10Q9HAW8 530 aa14□□□□□ -0.17
CLN3-249ENST00000636685 UGT1A8Q9HAW9 530 aa14□□□□□ -0.17
CLN3-249ENST00000636685 DLL4Q9NR61 685 aa14□□□□□ -0.17
CLN3-249ENST00000636685 SAMSN1Q9NSI8 373 aaKnown RBP14□□□□□ -0.17
CLN3-249ENST00000636685 TNFRSF10DQ9UBN6 386 aa14□□□□□ -0.17
CLN3-249ENST00000636685 DNMT3AQ9Y6K1 912 aaPredicted RBP14□□□□□ -0.17
CLN3-249ENST00000636685 COLEC10Q9Y6Z7 277 aa14□□□□□ -0.17
CLN3-249ENST00000636685 BHMG1C9JSJ3 638 aaPredicted RBP13.99□□□□□ -0.17
CLN3-249ENST00000636685 RASAL1O95294 804 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 POLBP06746 335 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 RARAP10276 462 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 ITGAXP20702 1163 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 CCNCP24863 283 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 PMP22Q01453 160 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 MMRN1Q13201 1228 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 RBBP7Q16576 425 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 FNBP1LQ5T0N5 605 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 DET1Q7L5Y6 550 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 TAOK1Q7L7X3 1001 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 LILRA3Q8N6C8 439 aaPredicted RBP13.99□□□□□ -0.17
CLN3-249ENST00000636685 C19orf47Q8N9M1 422 aaKnown RBP13.99□□□□□ -0.17
CLN3-249ENST00000636685 ACVR1CQ8NER5 493 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 DNAJB8Q8NHS0 232 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 SPSB2Q99619 263 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 ZCCHC2Q9C0B9 1178 aaKnown RBP13.99□□□□□ -0.17
CLN3-249ENST00000636685 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.99□□□□□ -0.17
CLN3-249ENST00000636685 SOX17Q9H6I2 414 aaPredicted RBP13.99□□□□□ -0.17
CLN3-249ENST00000636685 GPAMQ9HCL2 828 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 HAUS2Q9NVX0 235 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 PTGFRNQ9P2B2 879 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 ACSL5Q9ULC5 683 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 RPH3AQ9Y2J0 694 aaPredicted RBP13.99□□□□□ -0.17
CLN3-249ENST00000636685 MEMO1Q9Y316 297 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 SPO11Q9Y5K1 396 aa13.99□□□□□ -0.17
CLN3-249ENST00000636685 C17orf113A0A1B0GUU1 675 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 MGAT4DA6NG13 374 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 ALAS2P22557 587 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 PCK1P35558 622 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 SOX11P35716 441 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 NKG7Q16617 165 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 IFI16Q16666 785 aaKnown RBP13.98□□□□□ -0.17
CLN3-249ENST00000636685 LONRF1Q17RB8 773 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 BOLA3Q53S33 107 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 Q71RC1 249 aaPredicted RBP13.98□□□□□ -0.17
CLN3-249ENST00000636685 OVCH1Q7RTY7 1134 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 TMEM200AQ86VY9 491 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 FATE1Q969F0 183 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 TSGA13Q96PP4 275 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 XKR8Q9H6D3 395 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 ZNF160Q9HCG1 818 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 IL26Q9NPH9 171 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 CCM2LQ9NUG4 571 aaPredicted RBP13.98□□□□□ -0.17
CLN3-249ENST00000636685 IRAK4Q9NWZ3 460 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 ACTR10Q9NZ32 417 aa13.98□□□□□ -0.17
CLN3-249ENST00000636685 FN1P02751 2386 aaKnown RBP13.98□□□□□ -0.17
CLN3-249ENST00000636685 C2orf74A8MZ97 194 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 CD48P09326 243 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 PCSK7Q16549 785 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 LDLRAP1Q5SW96 308 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 CCDC122Q5T0U0 273 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 GPRC6AQ5T6X5 926 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 NCBP2-AS2Q69YL0 99 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 SPESP1Q6UW49 350 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 DAAM2Q86T65 1068 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 ADGRF3Q8IZF5 1079 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 MLKLQ8NB16 471 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 DDHD1Q8NEL9 900 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 BRIX1Q8TDN6 353 aaKnown RBP13.97□□□□□ -0.17
CLN3-249ENST00000636685 PSMF1Q92530 271 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 HAS2Q92819 552 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 FKBP10Q96AY3 582 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 MAGED4Q96JG8 741 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 FERD3LQ96RJ6 166 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 XPO4Q9C0E2 1151 aaKnown RBP13.97□□□□□ -0.17
CLN3-249ENST00000636685 MRM3Q9HC36 420 aaKnown RBP13.97□□□□□ -0.17
CLN3-249ENST00000636685 ZNF835Q9Y2P0 537 aa13.97□□□□□ -0.17
CLN3-249ENST00000636685 KIAA1324LA8MWY0 1029 aaPredicted RBP13.96□□□□□ -0.17
CLN3-249ENST00000636685 GADD45BO75293 160 aaPredicted RBP13.96□□□□□ -0.17
CLN3-249ENST00000636685 KRT81Q14533 505 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 PAFAH1B3Q15102 231 aaKnown RBP13.96□□□□□ -0.17
CLN3-249ENST00000636685 SKOR2Q2VWA4 1001 aaPredicted RBP13.96□□□□□ -0.17
CLN3-249ENST00000636685 TCP11X2Q5H9J9 407 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 TLDC1Q6P9B6 456 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 FAM151BQ6UXP7 276 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 TTLL10Q6ZVT0 673 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms