RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 HGH1Q9BTY7 390 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 EPB41L1Q9H4G0 881 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 PRORYQ9H606 182 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 MVB12BQ9H7P6 319 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 POLR1BQ9H9Y6 1135 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 LRRC4CQ9HCJ2 640 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 ASF1AQ9Y294 204 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 UBXN7O94888 489 aa17.62■□□□□ 0.41
CLN3-239ENST00000628023 SLU7O95391 586 aaKnown RBP17.62■□□□□ 0.41
CLN3-239ENST00000628023 MPOP05164 745 aa17.62■□□□□ 0.41
CLN3-239ENST00000628023 ECHS1P30084 290 aa17.62■□□□□ 0.41
CLN3-239ENST00000628023 LSSP48449 732 aa17.62■□□□□ 0.41
CLN3-239ENST00000628023 GPX6P59796 221 aa17.62■□□□□ 0.41
CLN3-239ENST00000628023 GABREP78334 506 aa17.62■□□□□ 0.41
CLN3-239ENST00000628023 BROXQ5VW32 411 aa17.62■□□□□ 0.41
CLN3-239ENST00000628023 VRK3Q8IV63 474 aa17.62■□□□□ 0.41
CLN3-239ENST00000628023 SIDT2Q8NBJ9 832 aaKnown RBP17.62■□□□□ 0.41
CLN3-239ENST00000628023 FBF1Q8TES7 1133 aa17.62■□□□□ 0.41
CLN3-239ENST00000628023 BBC3Q96PG8 261 aaPredicted RBP17.62■□□□□ 0.41
CLN3-239ENST00000628023 GPR21Q99679 349 aa17.62■□□□□ 0.41
CLN3-239ENST00000628023 TRIT1Q9H3H1 467 aaKnown RBP17.62■□□□□ 0.41
CLN3-239ENST00000628023 KIR3DX1Q9H7L2 352 aa17.62■□□□□ 0.41
CLN3-239ENST00000628023 RDH14Q9HBH5 336 aa17.62■□□□□ 0.41
CLN3-239ENST00000628023 TRMT6Q9UJA5 497 aaKnown RBP17.62■□□□□ 0.41
CLN3-239ENST00000628023 CORO1CQ9ULV4 474 aaPredicted RBP17.62■□□□□ 0.41
CLN3-239ENST00000628023 TK2O00142 265 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 GPC4O75487 556 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 PIAS1O75925 651 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 SLCO2B1O94956 709 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 RPN2P04844 631 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 TYRP1P17643 537 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 GABRB3P28472 473 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 CD1CP29017 333 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 ERVPABLB-1P60509 514 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 ABRQ12979 859 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 CLPPQ16740 277 aaPredicted RBP17.61■□□□□ 0.41
CLN3-239ENST00000628023 RBM20Q5T481 1227 aaKnown RBP17.61■□□□□ 0.41
CLN3-239ENST00000628023 UGT3A1Q6NUS8 523 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 KLHL35Q6PF15 583 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 GPR155Q7Z3F1 870 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 PHC3Q8NDX5 983 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 ZFPM2Q8WW38 1151 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 NCSTNQ92542 709 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 FOPNLQ96NB1 174 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 TMEM74Q96NL1 305 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 NUDT22Q9BRQ3 303 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 CDC42EP4Q9H3Q1 356 aaKnown RBP17.61■□□□□ 0.41
CLN3-239ENST00000628023 THSD1Q9NS62 852 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 TAS2R13Q9NYV9 303 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 NINJ2Q9NZG7 142 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 GALPQ9UBC7 116 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 CDYLQ9Y232 598 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 TDRKHQ9Y2W6 561 aaKnown RBP17.61■□□□□ 0.41
CLN3-239ENST00000628023 PSAT1Q9Y617 370 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 UNC13CQ8NB66 2214 aa17.61■□□□□ 0.41
CLN3-239ENST00000628023 LOC400499M0QZD8 3231 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 PTPRQQ9UMZ3 2332 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 TEX51A0A1B0GUA7 166 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 FAM159BA6NKW6 160 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 KDM1AO60341 852 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 DXOO77932 396 aaKnown RBP17.6■□□□□ 0.41
CLN3-239ENST00000628023 ACSL3O95573 720 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 ACADLP28330 430 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 ATP5DP30049 168 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 CSF2RBP32927 897 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 CLCN7P51798 805 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 UCNP55089 124 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 INHBCP55103 352 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 PRKG2Q13237 762 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 PDAP1Q13442 181 aaKnown RBP17.6■□□□□ 0.41
CLN3-239ENST00000628023 SLMAPQ14BN4 828 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 KYNUQ16719 465 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 ISXQ2M1V0 245 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 KBTBD12Q3ZCT8 623 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 PHF19Q5T6S3 580 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 HECTD2Q5U5R9 776 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 FAM45BPQ6NSW5 357 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 CYS1Q717R9 158 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 SPACA3Q8IXA5 215 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 TBC1D21Q8IYX1 336 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 PPM1NQ8N819 430 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 LSM14AQ8ND56 463 aaKnown RBP17.6■□□□□ 0.41
CLN3-239ENST00000628023 ACVR1CQ8NER5 493 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 OR5AR1Q8NGP9 310 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 FAM45AQ8TCE6 357 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 LCN9Q8WX39 176 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 INPP5DQ92835 1189 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 ELMO2Q96JJ3 720 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 CPNE1Q99829 537 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 DPYSL5Q9BPU6 564 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 STRADBQ9C0K7 418 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 SMYD2Q9NRG4 433 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 SLC24A2Q9UI40 661 aa17.6■□□□□ 0.41
CLN3-239ENST00000628023 CXorf49A8MYA2 514 aaPredicted RBP17.59■□□□□ 0.41
CLN3-239ENST00000628023 TMX2-CTNND1H3BSU7 103 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 ATXN7O15265 892 aaPredicted RBP17.59■□□□□ 0.41
CLN3-239ENST00000628023 SAT1P21673 171 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 RBMS1P29558 406 aaKnown RBP17.59■□□□□ 0.41
CLN3-239ENST00000628023 CAPZBP47756 277 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 TUBB4BP68371 445 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms