RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 GGA3Q9NZ52 723 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 NPAP1Q9NZP6 1156 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 NPIPB15A6NHN6 443 aaPredicted RBP2.3□□□□□ -2.04
SCN1A-208ENST00000625916 DFFBO76075 338 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 MELTFP08582 738 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 HMGB1P09429 215 aaKnown RBP2.3□□□□□ -2.04
SCN1A-208ENST00000625916 GP9P14770 177 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 MTHFRP42898 656 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 MAPK9P45984 424 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 HLCSP50747 726 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 SNRPEP62304 92 aaKnown RBP2.3□□□□□ -2.04
SCN1A-208ENST00000625916 CX3CL1P78423 397 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 PPP2R2BQ00005 443 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 ZSCAN23Q3MJ62 389 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 LYSMD4Q5XG99 296 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 CYP20A1Q6UW02 462 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 AQP11Q8NBQ7 271 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 PPFIBP2Q8ND30 876 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 GPRC5AQ8NFJ5 357 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 OR6S1Q8NH40 331 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 ATP8B4Q8TF62 1192 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 ZNF486Q96H40 463 aaPredicted RBP2.3□□□□□ -2.04
SCN1A-208ENST00000625916 FAM81BQ96LP2 452 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 LINC00167Q96N53 147 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 WDFY2Q96P53 400 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 AGAP4Q96P64 663 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 SLC22A12Q96S37 553 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 PAIP1Q9H074 479 aaKnown RBP2.3□□□□□ -2.04
SCN1A-208ENST00000625916 HHATLQ9HCP6 504 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 OSGIN1Q9UJX0 560 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 COMMD10Q9Y6G5 202 aa2.3□□□□□ -2.04
SCN1A-208ENST00000625916 FAM237BA0A1B0GVD1 139 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 PRSS51A0A1B0GVH4 220 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 NDUFS4O43181 175 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 GH2P01242 217 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 ACTN1P12814 892 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 TMEM11P17152 192 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 XBP1P17861 261 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 ZBTB25P24278 435 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 PDX1P52945 283 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 DMPKQ09013 629 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 NIPAL4Q0D2K0 466 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 MTHFSDQ2M296 383 aaKnown RBP2.29□□□□□ -2.04
SCN1A-208ENST00000625916 TMEM198Q66K66 360 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 GLDNQ6ZMI3 551 aaPredicted RBP2.29□□□□□ -2.04
SCN1A-208ENST00000625916 NOL8Q76FK4 1167 aaKnown RBP2.29□□□□□ -2.04
SCN1A-208ENST00000625916 BTN2A1Q7KYR7 527 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 FRMD1Q8N878 549 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 ANKRD42Q8N9B4 389 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 HJURPQ8NCD3 748 aaPredicted RBP2.29□□□□□ -2.04
SCN1A-208ENST00000625916 TBC1D16Q8TBP0 767 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 MAPK15Q8TD08 544 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 RNF128Q8TEB7 428 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 LRRC15Q8TF66 581 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 MOAP1Q96BY2 351 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 PDLIM5Q96HC4 596 aaKnown RBP2.29□□□□□ -2.04
SCN1A-208ENST00000625916 GAD1Q99259 594 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 MED20Q9H944 212 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 GNB4Q9HAV0 340 aa2.29□□□□□ -2.04
SCN1A-208ENST00000625916 RRN3P2A6NIE6 340 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 GAPDHSO14556 408 aaPredicted RBP2.28□□□□□ -2.04
SCN1A-208ENST00000625916 FOLR2P14207 255 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 LHCGRP22888 699 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 IL4RP24394 825 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 ZFP36L2P47974 494 aaKnown RBP2.28□□□□□ -2.04
SCN1A-208ENST00000625916 B3GALT5-AS1P59052 145 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 MDH1BQ5I0G3 518 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 C20orf194Q5TEA3 1177 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 LINGO4Q6UY18 593 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 KIF6Q6ZMV9 814 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 SLC25A42Q86VD7 318 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 ARHGAP12Q8IWW6 846 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 ABHD12Q8N2K0 398 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 GPD1LQ8N335 351 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 TSPYL6Q8N831 410 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 KCNG4Q8TDN1 519 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 CHPT1Q8WUD6 406 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 C1QTNF1Q9BXJ1 281 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 VN1R1Q9GZP7 353 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 DNAJC18Q9H819 358 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 PPANQ9NQ55 473 aaKnown RBP2.28□□□□□ -2.04
SCN1A-208ENST00000625916 NDE1Q9NXR1 346 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 RRN3Q9NYV6 651 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 OR6C2Q9NZP2 312 aa2.28□□□□□ -2.04
SCN1A-208ENST00000625916 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP2.28□□□□□ -2.04
SCN1A-208ENST00000625916 ANKRD61A6NGH8 418 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 A8MXK9 166 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 GPRIN2O60269 458 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 THEGLP0DJG4 465 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 NMBRP28336 390 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 CAPGP40121 348 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 BIRC2Q13490 618 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 SQLEQ14534 574 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 XKR3Q5GH77 459 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 INTS11Q5TA45 600 aaKnown RBP2.27□□□□□ -2.05
SCN1A-208ENST00000625916 ACAD10Q6JQN1 1059 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 RAPH1Q70E73 1250 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 CNOT6LQ96LI5 555 aaKnown RBP2.27□□□□□ -2.05
SCN1A-208ENST00000625916 NECTIN4Q96NY8 510 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 FNBP1Q96RU3 617 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms